Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LSP21_RS16980 Genome accession   NZ_CP089068
Coordinates   3669018..3669653 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3664018..3674653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP21_RS16965 (LSP21_16965) - 3664724..3665968 (+) 1245 WP_017001504.1 lipoprotein-releasing ABC transporter permease subunit -
  LSP21_RS16970 (LSP21_16970) - 3666056..3666589 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  LSP21_RS16975 (LSP21_16975) comA 3666720..3668945 (+) 2226 WP_003113988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LSP21_RS16980 (LSP21_16980) exbB 3669018..3669653 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LSP21_RS16985 (LSP21_16985) - 3669650..3670090 (+) 441 WP_017001503.1 biopolymer transporter ExbD -
  LSP21_RS16990 (LSP21_16990) lpxK 3670090..3671088 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  LSP21_RS16995 (LSP21_16995) - 3671126..3671311 (+) 186 WP_003091157.1 Trm112 family protein -
  LSP21_RS17000 (LSP21_17000) kdsB 3671311..3672075 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LSP21_RS17005 (LSP21_17005) - 3672075..3672539 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  LSP21_RS17010 (LSP21_17010) murB 3672536..3673555 (+) 1020 WP_017001502.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=635135 LSP21_RS16980 WP_003091163.1 3669018..3669653(+) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF13]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=635135 LSP21_RS16980 WP_003091163.1 3669018..3669653(+) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF13]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81