Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSP16_RS10450 Genome accession   NZ_CP089067
Coordinates   2213817..2214374 (-) Length   185 a.a.
NCBI ID   WP_219832895.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2208817..2219374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS32535 pilY1 2208910..2212400 (-) 3491 Protein_2060 type 4a pilus biogenesis protein PilY1 -
  LSP16_RS10440 (LSP16_10430) pilX 2212412..2212999 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  LSP16_RS10445 (LSP16_10435) pilW 2212996..2213820 (-) 825 WP_016253896.1 type 4a pilus minor pilin PilW -
  LSP16_RS10450 (LSP16_10440) pilV 2213817..2214374 (-) 558 WP_219832895.1 type IV pilus modification protein PilV Machinery gene
  LSP16_RS10455 (LSP16_10445) - 2214365..2214871 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LSP16_RS10460 (LSP16_10450) - 2214977..2215486 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  LSP16_RS10465 (LSP16_10455) thiO 2215621..2216715 (+) 1095 WP_020750388.1 glycine oxidase ThiO -
  LSP16_RS10470 (LSP16_10460) pilR 2216761..2218098 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20038.14 Da        Isoelectric Point: 7.9484

>NTDB_id=635088 LSP16_RS10450 WP_219832895.1 2213817..2214374(-) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYHICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=635088 LSP16_RS10450 WP_219832895.1 2213817..2214374(-) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACC
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995