Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LSP20_RS23920 Genome accession   NZ_CP089065
Coordinates   5146454..5147089 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5141454..5152089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS23890 (LSP20_23900) murB 5142552..5143571 (-) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -
  LSP20_RS23895 (LSP20_23905) - 5143568..5144032 (-) 465 WP_023517791.1 low molecular weight protein-tyrosine-phosphatase -
  LSP20_RS23900 (LSP20_23910) kdsB 5144032..5144796 (-) 765 WP_023517792.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LSP20_RS23905 (LSP20_23915) - 5144796..5144981 (-) 186 WP_003091157.1 Trm112 family protein -
  LSP20_RS23910 (LSP20_23920) lpxK 5145019..5146017 (-) 999 WP_023517793.1 tetraacyldisaccharide 4'-kinase -
  LSP20_RS23915 (LSP20_23925) - 5146017..5146457 (-) 441 WP_023517794.1 biopolymer transporter ExbD -
  LSP20_RS23920 (LSP20_23930) exbB 5146454..5147089 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LSP20_RS23925 (LSP20_23935) comA 5147162..5149387 (-) 2226 WP_023517795.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LSP20_RS23930 (LSP20_23940) - 5149518..5150051 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  LSP20_RS23935 (LSP20_23945) - 5150139..5151383 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=635067 LSP20_RS23920 WP_003091163.1 5146454..5147089(-) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=635067 LSP20_RS23920 WP_003091163.1 5146454..5147089(-) (exbB) [Pseudomonas aeruginosa strain UNC_PaerCF34]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81