Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSP20_RS08825 Genome accession   NZ_CP089065
Coordinates   1905413..1905970 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1900413..1910970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP20_RS08810 (LSP20_08810) pilY1 1900511..1903996 (-) 3486 WP_023518093.1 type 4a pilus biogenesis protein PilY1 -
  LSP20_RS08815 (LSP20_08815) pilX 1904008..1904595 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  LSP20_RS08820 (LSP20_08820) pilW 1904592..1905416 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LSP20_RS08825 (LSP20_08825) pilV 1905413..1905970 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LSP20_RS08830 (LSP20_08830) - 1905961..1906467 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LSP20_RS08835 (LSP20_08835) - 1906573..1907082 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  LSP20_RS08840 (LSP20_08840) thiO 1907217..1908311 (+) 1095 WP_023518092.1 glycine oxidase ThiO -
  LSP20_RS08845 (LSP20_08845) pilR 1908357..1909694 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=635052 LSP20_RS08825 WP_003119423.1 1905413..1905970(-) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF34]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=635052 LSP20_RS08825 WP_003119423.1 1905413..1905970(-) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF34]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995