Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSP22_RS07650 Genome accession   NZ_CP089064
Coordinates   1624390..1624914 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain UNC_PaerCF35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619390..1629914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP22_RS07630 (LSP22_07630) pilR 1620652..1621989 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  LSP22_RS07635 (LSP22_07635) thiO 1622035..1623129 (-) 1095 WP_033951244.1 glycine oxidase ThiO -
  LSP22_RS07640 (LSP22_07640) - 1623269..1623769 (+) 501 WP_003116259.1 GspH/FimT family pseudopilin -
  LSP22_RS07645 (LSP22_07645) - 1623892..1624380 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  LSP22_RS07650 (LSP22_07650) pilV 1624390..1624914 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  LSP22_RS07655 (LSP22_07655) - 1624923..1625738 (+) 816 WP_231822117.1 PilW family protein -
  LSP22_RS07660 (LSP22_07660) - 1625735..1626340 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  LSP22_RS07665 (LSP22_07665) - 1626354..1629830 (+) 3477 WP_231822118.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=635016 LSP22_RS07650 WP_003116261.1 1624390..1624914(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF35]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=635016 LSP22_RS07650 WP_003116261.1 1624390..1624914(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF35]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598