Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   U719_RS11220 Genome accession   NC_022794
Coordinates   2103181..2104983 (-) Length   600 a.a.
NCBI ID   WP_023468886.1    Uniprot ID   -
Organism   Exiguobacterium sp. MH3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2098181..2109983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U719_RS11195 (U719_11435) - 2099033..2099920 (-) 888 WP_023468881.1 RluA family pseudouridine synthase -
  U719_RS11200 (U719_11440) - 2099939..2100742 (-) 804 WP_023468882.1 NAD kinase -
  U719_RS11205 (U719_11445) - 2100753..2101397 (-) 645 WP_023468883.1 GTP pyrophosphokinase family protein -
  U719_RS11210 (U719_11450) - 2101515..2102075 (+) 561 WP_051353632.1 CYTH domain-containing protein -
  U719_RS11215 (U719_11455) - 2102170..2102961 (+) 792 WP_023468885.1 DsbA family protein -
  U719_RS11220 (U719_11460) pepF 2103181..2104983 (-) 1803 WP_023468886.1 oligoendopeptidase F Regulator
  U719_RS11225 (U719_11465) - 2105048..2105998 (-) 951 WP_081706932.1 competence protein CoiA family protein -
  U719_RS11230 (U719_11470) cls 2106017..2107528 (-) 1512 WP_023468887.1 cardiolipin synthase -
  U719_RS11235 (U719_11475) - 2107597..2108319 (+) 723 WP_023468888.1 SDR family NAD(P)-dependent oxidoreductase -
  U719_RS11240 (U719_11480) mecA 2108382..2109008 (-) 627 WP_023468889.1 adaptor protein MecA -
  U719_RS11245 (U719_11485) spxA 2109180..2109578 (-) 399 WP_012370920.1 transcriptional regulator SpxA -
  U719_RS16945 (U719_11490) - 2109751..2109888 (-) 138 WP_023468890.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68390.73 Da        Isoelectric Point: 4.5583

>NTDB_id=63496 U719_RS11220 WP_023468886.1 2103181..2104983(-) (pepF) [Exiguobacterium sp. MH3]
MAEVLTRQDVDVTETWNLESIYATNEAWEEEFESVKAMLPLLVEYKGRLGQSAETLYEGLQLRDEVSRRLYKLYTYAHMR
YDENTADSFYQAMNDRARTLASQIGATLAFMTPELLAVPESTIETYLNENPDLAMYRHAFDELNQEREHVLTEAEEAILA
KAGEVLGQSGTTFGMLNNADLTFPKIKGEDGEETELTHGRFITFLESSDRSVREAAFKAMYGTYAKYTNTLASTLAGSVK
KDNFYADVRKFPSARAAALHGNAIPESVYDGLVEAVHEHLPLLHRYVALRKRVLGLDELHVYDMYTPLVSEVEMKVSYEE
AKQLMVEGLAPLGTEYKHILEEGLSERWVDVRETRGKRSGAYSSGAYDTQPFILMNWQDNINNLFTLAHEFGHSVHSYYT
RKSQPYPYGDYSIFVAEVASTTNEALLNDYLLKKVTDRKEKLYLLNNQLETFRGTLFRQTMFAEFEHAIHDAARLGQSLT
PEFLTSTYYALNQKYFGEEIVLDEEIGLEWARIPHFYYNYYVYQYATGISAAAALTDQILEEGQPAVERYINNFLKAGSS
DYPIEVLKAAGVDMTTKAPVEAALRQFERVLDEFEALLAE

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=63496 U719_RS11220 WP_023468886.1 2103181..2104983(-) (pepF) [Exiguobacterium sp. MH3]
ATGGCAGAAGTATTAACACGTCAAGATGTTGACGTTACAGAAACATGGAATCTAGAGTCGATTTACGCAACGAACGAAGC
GTGGGAAGAAGAATTCGAATCGGTGAAAGCGATGCTTCCATTACTCGTCGAGTATAAGGGTCGTCTTGGACAGAGTGCAG
AAACACTCTATGAAGGGTTACAGTTACGCGACGAAGTCTCAAGACGCCTTTATAAGCTTTATACATACGCGCACATGCGT
TATGACGAAAATACAGCAGACAGCTTCTACCAAGCTATGAATGACCGTGCTCGGACGCTCGCGTCGCAAATCGGAGCAAC
ACTTGCTTTCATGACACCAGAATTGTTAGCTGTACCTGAGTCAACGATTGAGACGTATCTTAATGAGAATCCAGATCTTG
CGATGTATCGTCATGCATTTGATGAATTGAATCAAGAGCGTGAACACGTCCTGACGGAAGCGGAAGAAGCGATTCTTGCA
AAGGCAGGAGAAGTACTCGGTCAATCCGGTACGACGTTCGGCATGTTGAACAATGCAGATCTGACATTCCCGAAAATCAA
AGGGGAAGACGGAGAAGAGACAGAGTTGACACATGGTCGCTTTATCACATTCCTCGAGTCATCTGATCGTTCGGTCCGTG
AAGCTGCATTTAAAGCGATGTATGGAACATATGCAAAATACACGAATACGCTCGCTTCGACACTTGCTGGGTCAGTTAAG
AAAGACAACTTCTATGCGGATGTCCGGAAGTTCCCATCGGCACGCGCAGCAGCTTTACATGGTAATGCGATTCCTGAGTC
CGTCTATGATGGATTAGTTGAAGCGGTACATGAGCATTTACCATTACTCCATCGTTACGTCGCTTTACGTAAGCGAGTAC
TTGGACTTGATGAACTACACGTGTATGATATGTACACACCGCTCGTTTCTGAGGTGGAGATGAAAGTCTCTTACGAGGAA
GCGAAACAATTGATGGTTGAAGGACTTGCACCGCTTGGAACAGAGTATAAGCACATCCTCGAAGAAGGATTGTCTGAACG
TTGGGTTGATGTCCGAGAGACGCGTGGTAAACGGAGTGGAGCCTACTCTTCTGGTGCTTATGATACACAGCCGTTCATTT
TGATGAACTGGCAAGACAACATCAACAACCTCTTTACACTCGCACATGAATTCGGACATTCTGTCCATAGTTATTACACG
CGGAAGTCTCAACCATATCCATATGGTGATTATTCAATCTTCGTCGCAGAAGTTGCCTCAACGACGAATGAAGCATTGTT
GAACGACTATCTATTGAAGAAAGTAACGGATCGTAAAGAAAAACTCTATTTATTAAACAATCAACTCGAAACATTCCGTG
GAACATTGTTCCGACAAACGATGTTCGCCGAGTTCGAACATGCAATTCATGATGCGGCTCGTCTTGGCCAATCGCTGACA
CCGGAATTCTTAACGTCAACGTATTATGCGTTGAATCAAAAATACTTCGGAGAAGAAATTGTATTGGATGAAGAAATCGG
TCTAGAATGGGCTCGGATTCCACACTTCTATTACAATTATTATGTCTATCAGTATGCAACGGGCATTTCTGCTGCCGCTG
CTTTGACGGATCAGATTCTAGAAGAAGGACAACCTGCTGTAGAGCGATACATTAACAATTTCTTAAAAGCGGGATCAAGT
GATTATCCAATCGAAGTATTAAAAGCTGCGGGTGTCGATATGACAACAAAAGCGCCAGTTGAAGCAGCATTGCGTCAATT
TGAACGTGTCCTAGATGAATTTGAAGCTTTGTTAGCAGAGTGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.829

97.333

0.485

Multiple sequence alignment