Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSP17_RS00010 Genome accession   NZ_CP089062
Coordinates   108..632 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain UNC_PaerCF38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..5632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP17_RS00010 (LSP17_00010) pilV 108..632 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  LSP17_RS00015 (LSP17_00015) - 641..1456 (+) 816 WP_016562347.1 PilW family protein -
  LSP17_RS00020 (LSP17_00020) - 1453..2058 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  LSP17_RS00025 (LSP17_00025) - 2072..5548 (+) 3477 WP_023103514.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=634936 LSP17_RS00010 WP_003116261.1 108..632(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF38]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=634936 LSP17_RS00010 WP_003116261.1 108..632(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF38]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598