Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LSP19_RS07945 Genome accession   NZ_CP089061
Coordinates   1713520..1714077 (+) Length   185 a.a.
NCBI ID   WP_034003333.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1708520..1719077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP19_RS07925 (LSP19_07925) pilR 1709796..1711133 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  LSP19_RS07930 (LSP19_07930) thiO 1711179..1712273 (-) 1095 WP_034003389.1 glycine oxidase ThiO -
  LSP19_RS07935 (LSP19_07935) - 1712408..1712917 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  LSP19_RS07940 (LSP19_07940) - 1713023..1713529 (+) 507 WP_019486633.1 Tfp pilus assembly protein FimT/FimU -
  LSP19_RS07945 (LSP19_07945) pilV 1713520..1714077 (+) 558 WP_034003333.1 type 4a pilus minor pilin PilV Machinery gene
  LSP19_RS07950 (LSP19_07950) pilW 1714074..1714898 (+) 825 WP_023101584.1 type 4a pilus minor pilin PilW -
  LSP19_RS07955 (LSP19_07955) pilX 1714895..1715482 (+) 588 WP_034003335.1 type 4a pilus minor pilin PilX -
  LSP19_RS07960 (LSP19_07960) pilY1 1715494..1718979 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20097.27 Da        Isoelectric Point: 8.4664

>NTDB_id=634912 LSP19_RS07945 WP_034003333.1 1713520..1714077(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF41]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDRMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=634912 LSP19_RS07945 WP_034003333.1 1713520..1714077(+) (pilV) [Pseudomonas aeruginosa strain UNC_PaerCF41]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGTATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCGGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.297

100

0.973