Detailed information NTG0634872

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: CSB63_RS05560
• Genome accession: NZ_CP089060
• Coordinates: 1029716..1030597 (-)
• Length: 293 a.a.
• NCBI ID: WP_111679622.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CH8
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1024716..1035597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSB63_RS05535 (CSB63_1146)	vicR	1025421..1026128 (-)	708	WP_011681206.1	response regulator YycF	Regulator
CSB63_RS05540 (CSB63_1147)	-	1026655..1027422 (+)	768	WP_011681207.1	amino acid ABC transporter ATP-binding protein	-
CSB63_RS05545 (CSB63_1148)	-	1027434..1028267 (+)	834	WP_134973271.1	transporter substrate-binding domain-containing protein	-
CSB63_RS05550 (CSB63_1149)	-	1028285..1028983 (+)	699	WP_014608374.1	amino acid ABC transporter permease	-
CSB63_RS05555 (CSB63_1150)	-	1028995..1029645 (+)	651	WP_014608375.1	amino acid ABC transporter permease	-
CSB63_RS05560 (CSB63_1151)	endA	1029716..1030597 (-)	882	WP_111679622.1	DNA/RNA non-specific endonuclease	Machinery gene
CSB63_RS05565 (CSB63_1152)	-	1030659..1030847 (-)	189	WP_011226090.1	DNA-directed RNA polymerase subunit beta	-
CSB63_RS05570 (CSB63_1153)	murA	1030849..1032120 (-)	1272	WP_134973272.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
CSB63_RS05575 (CSB63_1154)	-	1032190..1032426 (-)	237	WP_002946959.1	DUF1146 family protein	-
CSB63_RS05580 (CSB63_1155)	galE	1032615..1033628 (-)	1014	WP_014621668.1	UDP-glucose 4-epimerase GalE	-
CSB63_RS05585 (CSB63_1156)	-	1033643..1034104 (-)	462	WP_246752656.1	DUF4832 domain-containing protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31789.50 Da
• Isoelectric Point: 10.1789

>NTDB_id=634872 CSB63_RS05560 WP_111679622.1 1029716..1030597(-) (endA) [Streptococcus thermophilus strain CH8]
MAKRKTSLTNKQKRQLVTLIIAALIAVLGYLGTSNKLSPDNPIRQVASLVSGKSNKSIKSNGSTNSQSTPQEQLSETVMT
SSVKSQLGNSLEWNGAGAYIINRNKTNLNAKVSSQPYANNQVKTVQGQTVPTVANALLSKATRQYKNRQETGNGSTSWTP
AGWHQVQNLSGEYSHAVDRGHLLGYALIGGLKGFDASTSNPENIAVQTAWANQAYSDSSTGQNYYESLVRKALDKNKRVR
YRVTLIYEGENLIPSGTHLEAKSADGSLEFNVFVPNVQEGITLDYYSGKVTVN

Nucleotide

• Length: 882 bp

>NTDB_id=634872 CSB63_RS05560 WP_111679622.1 1029716..1030597(-) (endA) [Streptococcus thermophilus strain CH8]
ATGGCAAAAAGAAAGACATCTTTGACAAATAAACAGAAACGTCAGTTAGTCACATTAATAATAGCAGCTTTAATAGCTGT
TTTAGGTTACCTAGGAACCAGTAACAAGCTCTCGCCTGATAATCCTATCAGACAAGTAGCAAGTCTAGTTTCAGGGAAAT
CTAACAAATCCATTAAATCTAATGGTTCAACAAATAGTCAGTCTACACCACAAGAGCAGCTTTCTGAGACAGTAATGACT
AGTTCAGTCAAAAGCCAACTGGGTAATTCCTTGGAATGGAATGGAGCTGGGGCCTACATTATTAATAGAAATAAGACGAA
TCTAAATGCTAAGGTATCAAGCCAACCCTATGCTAATAACCAAGTCAAAACGGTTCAAGGACAAACTGTTCCTACAGTTG
CTAATGCCTTATTAAGTAAAGCAACTAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGTTCAACCTCTTGGACACCA
GCTGGATGGCACCAGGTTCAAAATTTATCAGGAGAGTATAGCCATGCCGTAGATAGAGGCCATTTGCTAGGTTATGCACT
GATAGGTGGTTTGAAAGGATTTGACGCCTCGACTTCAAATCCAGAGAATATTGCTGTTCAAACTGCTTGGGCAAATCAAG
CATATAGCGATAGTTCTACAGGCCAAAACTATTATGAAAGCCTAGTACGAAAAGCTCTGGATAAAAACAAACGTGTTCGT
TATCGTGTGACCCTGATTTATGAAGGAGAGAATCTCATTCCATCAGGAACACATCTTGAAGCTAAGTCAGCAGACGGCTC
ACTTGAGTTTAATGTCTTTGTTCCAAATGTACAAGAGGGAATTACACTAGATTACTATTCAGGAAAAGTAACGGTGAATT
GA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (101-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	72.385	81.57	0.59
endA	Streptococcus pneumoniae D39	72.385	81.57	0.59
endA	Streptococcus pneumoniae R6	72.385	81.57	0.59
endA	Streptococcus pneumoniae TIGR4	72.385	81.57	0.59