Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LSO60_RS14625 Genome accession   NZ_CP089051
Coordinates   3070290..3072518 (+) Length   742 a.a.
NCBI ID   WP_263512484.1    Uniprot ID   A0AA46NPL1
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3065290..3077518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS14600 (LSO60_14575) lnt 3065687..3067246 (+) 1560 WP_263512482.1 apolipoprotein N-acyltransferase -
  LSO60_RS14605 (LSO60_14580) - 3067312..3067650 (-) 339 WP_263512483.1 tRNA-binding protein -
  LSO60_RS14610 (LSO60_14585) - 3067783..3068121 (-) 339 WP_004991552.1 hypothetical protein -
  LSO60_RS14615 (LSO60_14590) gspG 3068452..3068904 (-) 453 WP_005001245.1 type II secretion system major pseudopilin GspG -
  LSO60_RS14620 (LSO60_14595) gspF 3068928..3070133 (-) 1206 WP_004991557.1 type II secretion system inner membrane protein GspF -
  LSO60_RS14625 (LSO60_14600) priA 3070290..3072518 (+) 2229 WP_263512484.1 primosomal protein N' Machinery gene
  LSO60_RS14630 (LSO60_14605) - 3072607..3074460 (+) 1854 WP_044434025.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LSO60_RS14635 (LSO60_14610) - 3074511..3075386 (+) 876 WP_004991565.1 Hsp33 family molecular chaperone HslO -
  LSO60_RS14640 (LSO60_14615) - 3075555..3076499 (+) 945 WP_263512485.1 DnaJ C-terminal domain-containing protein -
  LSO60_RS14645 (LSO60_14620) - 3076511..3076840 (+) 330 WP_004991571.1 chaperone modulator CbpM -
  LSO60_RS14650 (LSO60_14625) - 3076934..3077455 (+) 522 WP_005001233.1 ClbS/DfsB family four-helix bundle protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84710.97 Da        Isoelectric Point: 8.6145

>NTDB_id=634827 LSO60_RS14625 WP_263512484.1 3070290..3072518(+) (priA) [Acinetobacter ursingii strain RIVM_C010559]
MPNTPPPQTEIYRIRVAVPVYLYETFDYSLTQAQYQQAQVGARVAIPFGRQKLIGIITEKIAPDVPLDSRFQLKAIFELL
DDDAILDDKVLTLLTWSAQYYQFPIGEVMQAALPALLRQGKPLDILAHIWKIKPFEDAESKLKRSQKQFEAYQILKLHPT
GTTENILNLSGVETATLRALAKKDLVECHLETQDFRPTPVQLAQMPLTPNDDQKKAIQHVVQSLHHYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFHCDVALMHSGLNDSKRLQAWQQAKMGKASIILGTRSAIYTP
LHNLGLIILDEEHDISYKQQEGFRYHARDVALYRGHLENCPVILGSATPSIDSYHLVEQEKLKLLQLNQRAGVSLMPKMH
VIDLKVAKKKQGLSQQLIEQIQKKLDKKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYTYLHCHHCGTI
QRLPDQCPECQHQSLKTLGMGTGKVEEHLNELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNQPMILLGTQMLAKGHHFP
YVTLVAILDIDAGLLSVDVRAPERTAQLIVQVSGRAGRGEHKGDVYLQTLRPEHPMLTTLIEKDYHAVAKHMLHERKAAL
LPPYRYAVLIRSDSKNRDYSQQFLADIAAQLQLMAQDSIEIWGPIPAPMERKAGRYRAHMVILSQDRARMHFFLRQWWAQ
VVHLPKKHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=634827 LSO60_RS14625 WP_263512484.1 3070290..3072518(+) (priA) [Acinetobacter ursingii strain RIVM_C010559]
ATGCCAAACACGCCGCCACCTCAAACAGAGATTTACCGTATTCGGGTCGCTGTACCTGTCTATCTGTATGAGACCTTTGA
TTACAGCTTAACTCAGGCTCAATATCAACAGGCTCAGGTTGGCGCGCGCGTGGCAATTCCTTTTGGTCGGCAAAAATTGA
TTGGCATCATTACCGAGAAAATCGCGCCAGATGTTCCACTGGATTCACGGTTTCAGCTCAAAGCTATTTTTGAGCTGCTT
GATGATGATGCCATTTTAGATGATAAAGTTTTAACTTTGTTGACATGGTCAGCGCAGTATTATCAGTTCCCGATTGGGGA
GGTGATGCAAGCGGCTTTGCCTGCACTGTTACGACAAGGCAAACCATTGGATATTTTGGCGCATATCTGGAAAATCAAAC
CTTTTGAAGATGCAGAATCCAAACTTAAACGCTCGCAAAAGCAATTTGAAGCCTATCAAATTTTAAAACTACACCCAACT
GGAACGACCGAAAACATTTTAAATTTAAGTGGGGTAGAAACTGCGACTTTACGCGCTTTGGCAAAAAAAGATCTGGTCGA
ATGTCATTTAGAAACACAAGATTTTCGACCGACACCCGTTCAACTGGCACAAATGCCCCTCACGCCCAACGACGATCAGA
AAAAAGCTATTCAACACGTGGTTCAGTCACTCCATCATTATCAAGCTTTTTTACTGGACGGCTTAACAGGCAGTGGTAAA
ACCGAAGTCTATCTACACATCATGCATGAGGTGTTGAAACAAGGTAAGCAAGTGTTGGTTTTAGTGCCTGAAATCGGACT
AACCCCGCAAACCATTTCCCGATTTAAATCACGTTTTCATTGTGATGTTGCGCTGATGCATTCGGGCTTAAACGACTCCA
AACGTCTGCAAGCATGGCAACAAGCCAAAATGGGTAAAGCTTCAATCATTTTAGGCACACGCTCTGCTATTTATACGCCT
TTGCATAATCTTGGTTTAATCATTTTGGATGAAGAACATGATATTTCCTATAAACAACAGGAAGGCTTTCGTTATCATGC
ACGGGATGTGGCGCTGTATCGAGGGCATTTAGAAAACTGCCCTGTTATTTTAGGCTCAGCTACACCAAGTATTGATAGTT
ACCATCTGGTCGAACAGGAAAAATTAAAACTGCTACAACTCAATCAACGTGCCGGTGTGTCACTCATGCCGAAAATGCAT
GTGATTGATTTAAAGGTTGCCAAGAAAAAGCAAGGGTTGAGTCAACAACTGATTGAGCAAATCCAAAAAAAACTGGATAA
AAAAGAACAAGTGCTCATTTTTCTGAATCGCCGAGGTTATGCACCTGTTTTGGTTTGCGAAAGCTGTGGCTGGCAAGCCA
ATTGTCCACATTGTGATGCACATTTTACGCTGCATACTCAACCTTACACTTATCTGCATTGTCACCATTGCGGTACGATT
CAGCGCTTACCCGATCAATGTCCAGAGTGTCAGCATCAGAGCCTAAAGACTCTCGGAATGGGAACAGGTAAAGTTGAAGA
ACATTTGAATGAACTTTTTCCAGATCATGATGTGATTCGGGTCGACCGCGACAGCACCAGTCGGGTCGGAAGCTGGCAGA
AAATTTATGATCGGATTCAGCAAAATCAACCCATGATCTTGCTAGGCACACAAATGCTCGCCAAAGGTCATCATTTTCCT
TACGTCACCTTGGTTGCGATTTTAGATATCGATGCAGGTTTACTGTCTGTCGATGTCCGTGCACCTGAACGTACTGCACA
ATTGATTGTACAAGTGTCTGGTCGCGCTGGACGTGGGGAACATAAAGGTGACGTTTATTTACAGACGTTGAGACCTGAGC
ACCCCATGCTCACCACGCTGATCGAAAAAGATTATCATGCTGTCGCCAAACATATGCTCCATGAGCGTAAAGCTGCATTA
TTGCCCCCTTATCGTTATGCGGTATTGATTCGTTCAGATTCTAAAAACCGTGACTATAGTCAGCAATTCTTAGCCGACAT
CGCTGCCCAATTACAGTTAATGGCGCAGGATAGCATTGAGATTTGGGGGCCTATTCCCGCGCCGATGGAACGTAAAGCTG
GACGCTATCGGGCGCATATGGTGATCTTGTCGCAAGATCGCGCACGTATGCACTTCTTTTTACGGCAATGGTGGGCTCAA
GTGGTACATTTACCTAAAAAGCATCAATTACGTTTATCGATTGATGTTGATCCACAGGAATTTAACTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

80.593

100

0.806