Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LSO60_RS06875 Genome accession   NZ_CP089051
Coordinates   1432451..1433128 (+) Length   225 a.a.
NCBI ID   WP_263513191.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427451..1438128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS06845 (LSO60_06840) - 1428043..1429011 (+) 969 WP_263513189.1 DNA polymerase III subunit delta' -
  LSO60_RS06850 (LSO60_06845) - 1429024..1429365 (+) 342 WP_004989449.1 PilZ domain-containing protein -
  LSO60_RS06855 (LSO60_06850) - 1429383..1430156 (+) 774 WP_263513190.1 TatD family hydrolase -
  LSO60_RS06860 (LSO60_06855) - 1430200..1430808 (+) 609 WP_004989445.1 TetR/AcrR family transcriptional regulator -
  LSO60_RS06865 (LSO60_06860) - 1430903..1431403 (+) 501 WP_252718331.1 type II secretion system protein -
  LSO60_RS06870 (LSO60_06865) xcpV 1431720..1432073 (+) 354 WP_263513372.1 type II secretion system protein GspI Machinery gene
  LSO60_RS06875 (LSO60_06870) xcpW 1432451..1433128 (+) 678 WP_263513191.1 GspJ family type II secretion system protein Machinery gene
  LSO60_RS06880 (LSO60_06875) gspK 1433134..1434099 (+) 966 WP_262436338.1 type II secretion system minor pseudopilin GspK -
  LSO60_RS06885 (LSO60_06880) - 1434261..1434857 (+) 597 WP_044435159.1 6-carboxytetrahydropterin synthase -
  LSO60_RS06890 (LSO60_06885) ung 1434905..1435618 (+) 714 WP_004997171.1 uracil-DNA glycosylase -
  LSO60_RS06895 (LSO60_06890) - 1435615..1436739 (+) 1125 WP_004989425.1 enoyl-CoA hydratase/isomerase family protein -
  LSO60_RS06900 (LSO60_06895) tadA 1436743..1437264 (+) 522 WP_263513192.1 tRNA adenosine(34) deaminase TadA -
  LSO60_RS06905 (LSO60_06900) - 1437377..1437814 (+) 438 WP_034697759.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25411.73 Da        Isoelectric Point: 6.4776

>NTDB_id=634814 LSO60_RS06875 WP_263513191.1 1432451..1433128(+) (xcpW) [Acinetobacter ursingii strain RIVM_C010559]
MVELLVAIAIFAVLSALGWRVFDYLIKTKDRNAQHEEQLFILQDAYQQILRDTLQIIPLTANMNGQMRPALSLNNNVLQF
SKAGVTDPLGQGVSPYERIEYRYDASQKVVYRLKYSDLNLPNSVQPQSSILLKNVEKFQINVLNPQALNQWPDASLDFTQ
TQNLKLLPAGLKINVTIAGTEYEWIYSLLDTKAIVLKQQQNDASSNNNNSTNNTNHNSTNQTGQN

Nucleotide


Download         Length: 678 bp        

>NTDB_id=634814 LSO60_RS06875 WP_263513191.1 1432451..1433128(+) (xcpW) [Acinetobacter ursingii strain RIVM_C010559]
TTGGTTGAGCTTTTAGTCGCGATTGCGATATTTGCAGTATTGTCTGCATTAGGTTGGAGAGTTTTTGATTATCTCATCAA
GACTAAAGATCGAAATGCTCAGCACGAAGAGCAACTTTTTATTTTACAAGACGCATATCAGCAAATTTTGCGAGATACTT
TACAGATCATTCCACTTACGGCAAATATGAATGGGCAAATGCGTCCAGCATTATCACTGAATAATAACGTACTTCAGTTT
AGCAAAGCTGGTGTGACTGATCCATTAGGGCAGGGGGTGTCGCCCTATGAGCGGATTGAGTATCGCTATGATGCTTCGCA
GAAAGTAGTCTATCGCTTAAAATATTCAGATTTGAATCTACCCAATAGTGTACAGCCTCAATCCAGTATCCTATTGAAAA
ATGTGGAAAAGTTTCAAATTAATGTATTGAATCCTCAAGCTTTAAATCAATGGCCTGATGCAAGTTTAGATTTTACTCAG
ACTCAAAATTTAAAACTTCTGCCCGCAGGTTTAAAAATTAATGTCACCATTGCAGGAACTGAATATGAATGGATTTACAG
TTTGCTGGATACTAAAGCTATTGTTTTAAAGCAGCAACAAAATGATGCATCAAGCAACAATAATAATTCAACGAATAATA
CCAATCACAATTCCACTAATCAGACTGGACAGAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(51-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

65.957

83.556

0.551