Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | LSO60_RS06870 | Genome accession | NZ_CP089051 |
| Coordinates | 1431720..1432073 (+) | Length | 117 a.a. |
| NCBI ID | WP_263513372.1 | Uniprot ID | - |
| Organism | Acinetobacter ursingii strain RIVM_C010559 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1426720..1437073
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSO60_RS06840 (LSO60_06835) | kdsB | 1427267..1428028 (+) | 762 | WP_263513188.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| LSO60_RS06845 (LSO60_06840) | - | 1428043..1429011 (+) | 969 | WP_263513189.1 | DNA polymerase III subunit delta' | - |
| LSO60_RS06850 (LSO60_06845) | - | 1429024..1429365 (+) | 342 | WP_004989449.1 | PilZ domain-containing protein | - |
| LSO60_RS06855 (LSO60_06850) | - | 1429383..1430156 (+) | 774 | WP_263513190.1 | TatD family hydrolase | - |
| LSO60_RS06860 (LSO60_06855) | - | 1430200..1430808 (+) | 609 | WP_004989445.1 | TetR/AcrR family transcriptional regulator | - |
| LSO60_RS06865 (LSO60_06860) | - | 1430903..1431403 (+) | 501 | WP_252718331.1 | type II secretion system protein | - |
| LSO60_RS06870 (LSO60_06865) | xcpV | 1431720..1432073 (+) | 354 | WP_263513372.1 | type II secretion system protein GspI | Machinery gene |
| LSO60_RS06875 (LSO60_06870) | xcpW | 1432451..1433128 (+) | 678 | WP_263513191.1 | GspJ family type II secretion system protein | Machinery gene |
| LSO60_RS06880 (LSO60_06875) | gspK | 1433134..1434099 (+) | 966 | WP_262436338.1 | type II secretion system minor pseudopilin GspK | - |
| LSO60_RS06885 (LSO60_06880) | - | 1434261..1434857 (+) | 597 | WP_044435159.1 | 6-carboxytetrahydropterin synthase | - |
| LSO60_RS06890 (LSO60_06885) | ung | 1434905..1435618 (+) | 714 | WP_004997171.1 | uracil-DNA glycosylase | - |
| LSO60_RS06895 (LSO60_06890) | - | 1435615..1436739 (+) | 1125 | WP_004989425.1 | enoyl-CoA hydratase/isomerase family protein | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13025.87 Da Isoelectric Point: 8.5184
>NTDB_id=634813 LSO60_RS06870 WP_263513372.1 1431720..1432073(+) (xcpV) [Acinetobacter ursingii strain RIVM_C010559]
MVALAIFAIAAVAVTKVGMQYTQSTANAILRTKAQFVAMNEAAQMEINKQWLTGTESKQITSQGETWQIDKRSESTISPN
VQRVEIQVSLFNNEQGKVEVGITNIVFFNYPQQVKTQ
MVALAIFAIAAVAVTKVGMQYTQSTANAILRTKAQFVAMNEAAQMEINKQWLTGTESKQITSQGETWQIDKRSESTISPN
VQRVEIQVSLFNNEQGKVEVGITNIVFFNYPQQVKTQ
Nucleotide
Download Length: 354 bp
>NTDB_id=634813 LSO60_RS06870 WP_263513372.1 1431720..1432073(+) (xcpV) [Acinetobacter ursingii strain RIVM_C010559]
ATGGTGGCTTTGGCTATTTTTGCAATTGCAGCAGTTGCCGTGACAAAGGTGGGTATGCAATATACTCAGTCCACTGCAAA
TGCCATTTTAAGAACCAAAGCCCAATTTGTTGCCATGAATGAGGCGGCTCAAATGGAAATTAATAAACAATGGCTGACAG
GAACAGAGTCAAAACAAATTACCTCTCAGGGTGAAACTTGGCAAATTGATAAGCGCTCTGAATCGACCATCAGCCCTAAT
GTGCAGCGCGTTGAGATACAAGTCAGTTTATTTAATAATGAACAAGGCAAGGTCGAAGTTGGCATTACTAATATTGTGTT
TTTTAATTACCCTCAACAAGTTAAAACGCAATGA
ATGGTGGCTTTGGCTATTTTTGCAATTGCAGCAGTTGCCGTGACAAAGGTGGGTATGCAATATACTCAGTCCACTGCAAA
TGCCATTTTAAGAACCAAAGCCCAATTTGTTGCCATGAATGAGGCGGCTCAAATGGAAATTAATAAACAATGGCTGACAG
GAACAGAGTCAAAACAAATTACCTCTCAGGGTGAAACTTGGCAAATTGATAAGCGCTCTGAATCGACCATCAGCCCTAAT
GTGCAGCGCGTTGAGATACAAGTCAGTTTATTTAATAATGAACAAGGCAAGGTCGAAGTTGGCATTACTAATATTGTGTT
TTTTAATTACCCTCAACAAGTTAAAACGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
73.913 |
98.291 |
0.726 |