Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LSO60_RS02940 Genome accession   NZ_CP089051
Coordinates   589730..590611 (+) Length   293 a.a.
NCBI ID   WP_218665772.1    Uniprot ID   A0AA46NX65
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584730..595611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS02915 (LSO60_02915) wrbA 585923..586513 (+) 591 WP_151839054.1 NAD(P)H:quinone oxidoreductase -
  LSO60_RS02920 (LSO60_02920) - 586693..587067 (-) 375 WP_044436583.1 hypothetical protein -
  LSO60_RS02925 (LSO60_02925) - 587262..587837 (-) 576 WP_004985432.1 xanthine phosphoribosyltransferase -
  LSO60_RS02930 (LSO60_02930) - 587924..588640 (-) 717 WP_004985435.1 DUF3108 domain-containing protein -
  LSO60_RS02935 (LSO60_02935) - 588796..589491 (-) 696 WP_151839053.1 hypothetical protein -
  LSO60_RS02940 (LSO60_02940) tonB2 589730..590611 (+) 882 WP_218665772.1 energy transducer TonB Machinery gene
  LSO60_RS02945 (LSO60_02945) ybeY 590636..591115 (-) 480 WP_004995054.1 rRNA maturation RNase YbeY -
  LSO60_RS02950 (LSO60_02950) - 591194..592276 (-) 1083 WP_004985450.1 PhoH family protein -
  LSO60_RS02955 (LSO60_02955) miaB 592317..593768 (-) 1452 WP_049175635.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33349.95 Da        Isoelectric Point: 9.6784

>NTDB_id=634808 LSO60_RS02940 WP_218665772.1 589730..590611(+) (tonB2) [Acinetobacter ursingii strain RIVM_C010559]
MFKKNVGYFPVIRHWWQDSILLAAIAIAIVLHIFVLLIHFAMPAPSDTATKEIAVSIRPSTDQVEHTDFLAQANQKGSGK
FHDSHRMSSDMPKAMPDQSSGESPTQTLDHIQQQRELKFEEKVLMTVLSWQKQAEENQRKKAQDDLQSQFQAKAAMVASI
EAQYLQRQQNFSRQQRIKTVDGIQAKQDASAAYLNKFREKVELYGNRYYPDEAKQQNLAGEVRLMVVLNAQGGIRAIRLI
ESSGHPILDEAAKASVRRGAPFGRFDTGMKDISELRIIRTWRFNPAQAEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=634808 LSO60_RS02940 WP_218665772.1 589730..590611(+) (tonB2) [Acinetobacter ursingii strain RIVM_C010559]
ATGTTTAAAAAAAATGTAGGTTATTTTCCAGTGATTCGACACTGGTGGCAGGATTCTATTTTATTGGCTGCAATTGCGAT
TGCAATCGTGCTGCATATTTTCGTTTTGCTGATTCATTTCGCCATGCCTGCGCCATCGGATACTGCGACCAAAGAAATTG
CAGTATCGATTCGTCCAAGTACTGATCAGGTTGAGCATACCGACTTTTTAGCACAGGCAAATCAAAAAGGATCTGGAAAA
TTTCATGATTCTCACCGTATGTCGAGTGATATGCCCAAAGCCATGCCTGATCAGAGTTCAGGTGAGTCACCAACACAAAC
CCTTGACCATATTCAGCAACAACGTGAGCTAAAATTTGAAGAAAAAGTGCTGATGACGGTATTAAGCTGGCAAAAACAAG
CGGAAGAAAACCAGCGAAAAAAAGCACAGGATGATTTACAAAGCCAGTTTCAAGCTAAAGCAGCCATGGTCGCGAGCATT
GAGGCGCAATATTTACAGCGTCAGCAGAATTTTAGCCGACAGCAACGGATTAAAACCGTAGATGGTATTCAAGCCAAGCA
AGATGCATCAGCAGCCTATTTAAATAAATTTCGTGAAAAAGTGGAACTTTATGGCAACCGTTATTATCCAGATGAAGCCA
AACAACAAAATTTAGCAGGTGAAGTTCGACTCATGGTGGTGCTGAATGCACAAGGCGGCATTCGTGCGATTCGTTTAATC
GAGAGTTCTGGACACCCAATACTGGATGAAGCTGCTAAAGCATCGGTACGCCGTGGCGCACCGTTTGGTCGTTTTGATAC
AGGAATGAAGGATATTTCCGAATTACGGATTATCCGGACATGGAGATTTAACCCAGCACAGGCTGAGTTTGAAGTGCATT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

77.211

100

0.775