Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LSO60_RS01985 Genome accession   NZ_CP089051
Coordinates   415557..415883 (+) Length   108 a.a.
NCBI ID   WP_004995304.1    Uniprot ID   A0A3F3L3D3
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 410557..420883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS01960 (LSO60_01960) hemC 410787..411704 (+) 918 WP_263512783.1 hydroxymethylbilane synthase -
  LSO60_RS01965 (LSO60_01965) - 411730..412512 (+) 783 WP_263512785.1 uroporphyrinogen-III synthase -
  LSO60_RS01970 (LSO60_01970) - 412509..413345 (+) 837 WP_263512786.1 hypothetical protein -
  LSO60_RS01975 (LSO60_01975) - 413355..414542 (+) 1188 WP_151833864.1 heme biosynthesis protein HemY -
  LSO60_RS01980 (LSO60_01980) - 414551..414985 (+) 435 WP_049175782.1 thioesterase family protein -
  LSO60_RS01985 (LSO60_01985) hns 415557..415883 (+) 327 WP_004995304.1 H-NS family nucleoid-associated regulatory protein Regulator
  LSO60_RS01990 (LSO60_01990) gspN 416048..416791 (+) 744 WP_263512788.1 type II secretion system protein N -
  LSO60_RS01995 (LSO60_01995) - 416791..417624 (+) 834 WP_263512789.1 type II secretion system protein N -
  LSO60_RS02000 (LSO60_02000) gspD 417667..419940 (+) 2274 WP_263512790.1 type II secretion system secretin GspD -
  LSO60_RS02005 (LSO60_02005) - 420010..420663 (+) 654 WP_263512791.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12432.09 Da        Isoelectric Point: 4.8700

>NTDB_id=634804 LSO60_RS01985 WP_004995304.1 415557..415883(+) (hns) [Acinetobacter ursingii strain RIVM_C010559]
MKPDISELSVDELKRLQEEAEALIASKKDQAIEDAYNQILAVAEAVGFTVEELLEYGEQKRKKTTRKAVEPRYRNKNNPE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=634804 LSO60_RS01985 WP_004995304.1 415557..415883(+) (hns) [Acinetobacter ursingii strain RIVM_C010559]
ATGAAACCAGATATTAGTGAACTTTCGGTTGATGAGTTAAAACGGTTGCAAGAAGAAGCTGAGGCATTAATTGCATCTAA
AAAAGATCAGGCAATTGAAGATGCTTATAATCAAATTTTAGCAGTTGCTGAGGCAGTGGGCTTTACGGTTGAAGAATTAC
TTGAGTACGGTGAGCAAAAGCGTAAAAAAACTACGCGTAAAGCCGTTGAGCCGCGCTACCGTAATAAAAATAATCCAGAA
GAAACTTGGACAGGTCGTGGTAAACAACCTCGCTGGCTTGTTGCTGAACTTGAAAAAGGTGCAAAACTTGAAGACTTCTT
GATCTAG

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L3D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889