Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LSO58_RS14835 Genome accession   NZ_CP089044
Coordinates   3126017..3128245 (+) Length   742 a.a.
NCBI ID   WP_004991560.1    Uniprot ID   A0A3F3LDL5
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3121017..3133245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS14810 (LSO58_14780) lnt 3121414..3122973 (+) 1560 WP_004991547.1 apolipoprotein N-acyltransferase -
  LSO58_RS14815 (LSO58_14785) - 3123039..3123377 (-) 339 WP_004991549.1 tRNA-binding protein -
  LSO58_RS14820 (LSO58_14790) - 3123510..3123848 (-) 339 WP_004991552.1 hypothetical protein -
  LSO58_RS14825 (LSO58_14795) gspG 3124179..3124631 (-) 453 WP_004991554.1 type II secretion system major pseudopilin GspG -
  LSO58_RS14830 (LSO58_14800) gspF 3124655..3125860 (-) 1206 WP_004991557.1 type II secretion system inner membrane protein GspF -
  LSO58_RS14835 (LSO58_14805) priA 3126017..3128245 (+) 2229 WP_004991560.1 primosomal protein N' Machinery gene
  LSO58_RS14840 (LSO58_14810) - 3128334..3130187 (+) 1854 WP_004991563.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LSO58_RS14845 (LSO58_14815) - 3130238..3131113 (+) 876 WP_004991565.1 Hsp33 family molecular chaperone HslO -
  LSO58_RS14850 (LSO58_14820) - 3131284..3132228 (+) 945 WP_004991567.1 DnaJ C-terminal domain-containing protein -
  LSO58_RS14855 (LSO58_14825) - 3132240..3132569 (+) 330 WP_263503601.1 chaperone modulator CbpM -
  LSO58_RS14860 (LSO58_14830) - 3132663..3133184 (+) 522 WP_004991572.1 ClbS/DfsB family four-helix bundle protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84630.94 Da        Isoelectric Point: 8.6594

>NTDB_id=634787 LSO58_RS14835 WP_004991560.1 3126017..3128245(+) (priA) [Acinetobacter ursingii strain RIVM_C010761]
MPNTPPPQTEIYRIRVAVPVYLYETFDYSLTQAQYQQAQVGARVAIPFGRQKLIGIITEKIAPDVPLDSRFQLKAIFELL
DDDAILDDKVLTLLTWSAQYYQFPIGEVMQAALPALLRQGKPLDILAHIWKIKPCEDAESKLKRSQKQFEAYQILKLHPT
GTTENILNLSGVETATLRALAKKDLVECHLETQDFRPTPVQLAQMPLTPNDDQKKAIQHVVQSLHHYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFHCDVALMHSGLNDSKRLQAWQQAKMGKASIILGTRSAIYTP
LHNLGLIILDEEHDISYKQQEGFRYHARDVALYRGHLENCPVILGSATPSIDSYHLVEQEKLKLLQLNQRAGVALMPKMH
VIDLKVAKKKQGLSQQLIEQIKKKLDKKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYTYLHCHHCGTI
QRLPDQCPECQHQSLKTLGMGTGKVEEHLNELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNQPMILLGTQMLAKGHHFP
FVTLVAILDIDAGLLSVDVRAPERTAQLIVQVSGRAGRGEHKGDVYLQTLRPDHPMLTTLIEKDYRAVAKHMLQERKAAL
LPPYRYAVLIRSDSKNRDYSQQFLADIAAQLQLMAQDSIEIWGPIPAPMERKAGRYRAHMVILSQDRARMHFFLRQWWAQ
VVHLPKQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=634787 LSO58_RS14835 WP_004991560.1 3126017..3128245(+) (priA) [Acinetobacter ursingii strain RIVM_C010761]
ATGCCAAACACGCCGCCACCTCAAACAGAGATTTACCGTATTCGGGTCGCTGTACCTGTCTATCTGTATGAGACCTTTGA
TTACAGCTTAACTCAGGCTCAATATCAACAGGCTCAGGTTGGCGCGCGCGTGGCAATTCCTTTCGGTCGGCAAAAACTGA
TTGGCATCATTACCGAGAAAATCGCGCCAGATGTTCCACTGGATTCACGGTTTCAGCTCAAAGCTATTTTTGAGTTGCTT
GATGATGATGCCATTTTAGATGACAAAGTTTTAACTTTGTTGACATGGTCAGCACAGTATTATCAGTTTCCGATTGGGGA
GGTGATGCAAGCGGCTTTGCCTGCACTGTTACGACAAGGCAAACCATTGGATATTTTGGCGCATATCTGGAAAATCAAAC
CTTGTGAAGATGCAGAATCCAAACTTAAACGCTCGCAAAAGCAATTTGAAGCCTATCAAATTTTAAAATTACACCCAACT
GGAACGACCGAAAATATTTTAAATTTAAGTGGAGTAGAAACTGCGACTTTACGCGCTTTGGCAAAAAAGGATCTGGTCGA
ATGTCATTTAGAAACACAAGATTTTCGACCGACACCCGTTCAATTGGCACAAATGCCCCTCACTCCCAACGATGATCAGA
AAAAAGCCATTCAACATGTGGTTCAGTCGCTCCATCATTATCAAGCTTTTTTACTGGACGGCTTAACAGGCAGTGGCAAA
ACCGAAGTCTATCTACACATCATGCATGAGGTGTTGAAACAAGGGAAGCAAGTGTTGGTTTTAGTGCCTGAAATCGGACT
AACCCCACAAACCATTTCCCGATTTAAATCGCGTTTTCATTGTGATGTTGCGTTGATGCATTCGGGCTTAAACGACTCCA
AACGTCTGCAAGCATGGCAACAAGCCAAAATGGGTAAAGCTTCAATCATTTTAGGCACACGCTCTGCTATTTATACGCCT
TTGCATAATCTTGGTTTAATCATTTTGGATGAAGAACACGATATTTCCTACAAACAACAGGAAGGTTTTCGTTATCATGC
ACGGGATGTGGCGCTGTATCGAGGGCACTTAGAAAACTGCCCTGTTATTTTAGGCTCAGCCACACCAAGTATTGATAGTT
ACCATCTGGTCGAACAGGAAAAATTAAAACTGCTACAACTCAATCAACGTGCGGGTGTGGCACTTATGCCCAAAATGCAT
GTGATTGATTTAAAGGTTGCCAAGAAAAAGCAAGGGTTGAGTCAACAACTGATTGAGCAAATCAAAAAAAAACTGGATAA
AAAAGAACAAGTGCTCATTTTTCTGAATCGTCGGGGTTATGCACCTGTTTTGGTTTGCGAAAGCTGTGGCTGGCAAGCCA
ATTGTCCACATTGTGATGCGCATTTTACGCTGCATACTCAACCTTACACTTATCTGCATTGTCACCATTGCGGTACGATT
CAGCGCTTACCCGATCAATGTCCAGAGTGTCAGCATCAGAGCCTAAAGACTCTCGGAATGGGAACAGGTAAAGTTGAAGA
ACATTTGAATGAACTTTTTCCAGATCATGATGTGATTCGGGTCGACCGCGACAGCACCAGTCGGGTCGGAAGCTGGCAGA
AAATTTATGATCGGATTCAGCAAAATCAACCCATGATCTTGCTGGGTACACAAATGCTCGCCAAAGGTCATCATTTTCCT
TTTGTCACCTTGGTTGCGATTTTAGATATTGATGCAGGTTTACTGTCTGTCGATGTTCGTGCACCTGAACGTACTGCACA
ATTGATTGTACAAGTGTCTGGTCGCGCTGGGCGGGGGGAACATAAAGGTGACGTTTATTTACAGACATTGAGACCTGATC
ATCCCATGCTCACCACGCTGATCGAAAAAGATTATCGTGCTGTCGCCAAACATATGCTGCAAGAGCGTAAAGCTGCATTG
TTGCCTCCTTATCGTTATGCAGTATTGATTCGTTCAGATTCTAAAAACCGTGACTATAGTCAGCAATTCTTAGCCGACAT
CGCAGCCCAATTACAGTTAATGGCGCAGGATAGTATTGAGATTTGGGGGCCTATTCCCGCGCCGATGGAACGCAAAGCTG
GACGCTATCGGGCGCATATGGTGATCTTGTCGCAAGATCGCGCACGTATGCACTTCTTTTTACGGCAATGGTGGGCGCAA
GTGGTACATTTACCTAAACAGCATCAATTACGTTTATCGATTGATGTTGATCCACAGGAATTTAACTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3LDL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.402

100

0.814