Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LSO58_RS03095 Genome accession   NZ_CP089044
Coordinates   655764..660389 (+) Length   1541 a.a.
NCBI ID   WP_218664819.1    Uniprot ID   A0AA46S8G3
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 650764..665389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS03070 (LSO58_03065) - 651213..651811 (-) 599 Protein_590 hypothetical protein -
  LSO58_RS03075 (LSO58_03070) pilG 652165..652548 (+) 384 WP_004992473.1 twitching motility response regulator PilG Regulator
  LSO58_RS03080 (LSO58_03075) - 652576..652944 (+) 369 WP_263503674.1 response regulator -
  LSO58_RS03085 (LSO58_03080) - 652950..653486 (+) 537 WP_263503675.1 chemotaxis protein CheW -
  LSO58_RS03090 (LSO58_03085) - 653534..655615 (+) 2082 WP_004992476.1 methyl-accepting chemotaxis protein -
  LSO58_RS03095 (LSO58_03090) chpA 655764..660389 (+) 4626 WP_218664819.1 Hpt domain-containing protein Regulator
  LSO58_RS03100 (LSO58_03095) - 660389..660841 (+) 453 WP_004992479.1 hypothetical protein -
  LSO58_RS03105 (LSO58_03100) - 660976..661140 (-) 165 WP_004992481.1 hypothetical protein -
  LSO58_RS03110 (LSO58_03105) - 661160..662365 (-) 1206 WP_004992482.1 RtcB family protein -
  LSO58_RS03115 (LSO58_03110) - 662670..664130 (-) 1461 WP_004994944.1 amino acid permease -
  LSO58_RS03120 (LSO58_03115) - 664144..665163 (-) 1020 WP_010588607.1 class I SAM-dependent methyltransferase -

Sequence


Protein


Download         Length: 1541 a.a.        Molecular weight: 172910.20 Da        Isoelectric Point: 4.3968

>NTDB_id=634771 LSO58_RS03095 WP_218664819.1 655764..660389(+) (chpA) [Acinetobacter ursingii strain RIVM_C010761]
MKEILKHLVEKISLPEDSFLDQDEEILEIFIEELEEIFQELGQLIPQWVADSDEQQVLADVRRHFHTLKGSGRMVGAKSS
SELAWTVEEALNRIIAKTLPLSADLQRFVQVVFNVYRFKFYHDFKNTQPHSIDIRPLVLLGQQLQHQQDVEPALEELLDL
AEQLNTESGITGLEIQQQQIIEAEQPVEVEPAAIADTCVDAVASSDDSLIEETMAIFLEEAEEHLQTIDTFLQQDEPSDQ
SYNQLIRALHTLRGSSSMAHIQQVFEASSKVETLFKTLMQDELESTSNETALLTHYAEFVRDYLHTLHQKGSQQQLDKID
QKFNQAWENYGFNIEEIAHEAQHPQGVVTSLLQLDIENLLNADYEFEKRVKLEFPVYIQALITEASSLIEHTHNRAAQGV
HDYVLQLKPAYEQLLEKPELLHLDYAFDIFGQAHQQVIHLFDTLAAGQRVSLGQEQLNVIHELQDFVQQDIETAITDKKV
SSELSADKVSAEPETVSIEPVAVSEPNVSTFDLSSISARIQQDHQHLDSEQANRNFDADLLDIFLEEADELLVGIDADLN
TWSQQQSNTSALNNLMRYLHTLKGGANMVQATHMGLIAHELETIYQRLIHGQIHSSENMIQIIRLVQDDIADRIQTLRDE
AVDYPATEVIELLGNIEQVLQGVPQQQPESATRTTSVDSTLAQVVAEPPTEVVEHELTADHLESVALGEPTSGVESDAVV
AEEQLQDSTSAANDALESQASISNTNVDIDNTKPYQDTDPDDVQSLVEATFYEEAAELLDAGQQLLNRWFDERTNRSILL
QLQRTVHSLKGGARMAELEPVAVIASHLENAFEQFAVKAFSSNAYDHLLLTAFTWLKAAIFERSYNNYDGLKHTLERLQF
VDTNAQIPTKLARADLFSQEQVMEFVQGDGTEPPSMLGEWDNTVQADDSNEMIRVSADLIEKMINLSGENAINRSRIQMD
LGQLGNTLVEMELAIQRLADQLRRMEGELESQIIAKHGAENLRYIDFDPLEMDQYSSLNQLSKSLAESASDLVDFKTTLS
DKIRDTEGLLLQQSRIQAEIQESLMRTRLVPFSRLLPRLQRIVRQTASSLNRPAELVVNNTEGELDRNILERLVTPLEHM
LRNAVDHGVEDREERLKLGKPEIGRIELNISRQGTDVLVSFSDDGKGIDVNKIKAKALENGLMTEDQKLEAQEILQYIFH
PGFSTATSVTQISGRGVGLDVVQSSIKALGGHVSVDSTFGSGTTFTIRVPTTVAVSDALMVKVGDQQFALPLAQIDRIVR
IAPATLERYFHGQDDYFNIDNTPYRLRYLAEFVSNQPIPKLSGIAHSLPVLLVKGAHGQTIALLVDQLVGSRAQIVVKPI
GRQFASIGAVAGATILGDGHVCLILDGQNIARQIQSTQRNKQVVEGREKTRHTDERRLIMIVDDSVTVRKVTSRLLERQG
FDVVTAKDGVDAMEQLENVKPDLMLLDIEMPRMDGFEVTNLVRHHELHQDMPIIMITSRTGEKHRERALSLGVTHYMGKP
FQESELLENIEALLETASGSY

Nucleotide


Download         Length: 4626 bp        

>NTDB_id=634771 LSO58_RS03095 WP_218664819.1 655764..660389(+) (chpA) [Acinetobacter ursingii strain RIVM_C010761]
ATGAAAGAAATATTAAAACATCTTGTTGAAAAAATAAGCTTACCTGAAGACAGTTTTCTTGATCAGGATGAAGAAATTCT
TGAAATTTTTATTGAAGAATTAGAAGAAATTTTTCAAGAATTGGGTCAACTTATTCCGCAGTGGGTGGCTGATTCTGATG
AGCAGCAGGTTTTAGCGGACGTTCGTCGCCATTTTCATACTCTAAAAGGGTCTGGTCGAATGGTGGGGGCGAAATCTTCC
AGTGAACTGGCGTGGACAGTTGAAGAAGCACTCAATCGAATTATTGCCAAAACTTTGCCATTAAGTGCAGATTTACAACG
TTTTGTGCAAGTGGTATTTAATGTTTATCGTTTTAAATTTTATCATGATTTTAAAAATACCCAGCCACACTCTATCGATA
TTCGTCCATTGGTTTTGTTGGGACAGCAGTTACAACACCAACAAGACGTCGAGCCTGCTTTAGAAGAATTACTCGATTTA
GCTGAACAGTTAAATACAGAATCTGGAATTACAGGGCTCGAAATTCAGCAACAACAGATCATTGAAGCTGAACAGCCAGT
TGAAGTAGAGCCTGCTGCCATAGCTGACACCTGTGTGGACGCAGTTGCTTCATCAGATGATAGTCTGATTGAAGAAACCA
TGGCGATTTTCCTTGAAGAAGCAGAAGAACATCTACAAACAATTGATACTTTTTTACAGCAAGATGAGCCATCAGATCAA
AGTTATAATCAATTGATTCGCGCTTTGCATACTTTGCGCGGTAGTTCATCGATGGCGCATATTCAGCAAGTATTTGAAGC
CAGCAGCAAGGTAGAAACGCTGTTTAAAACCTTGATGCAAGATGAGCTTGAGTCGACTTCAAATGAAACAGCGCTCTTAA
CCCACTACGCTGAATTTGTTCGAGATTATCTACATACACTGCACCAAAAGGGCTCTCAACAACAGCTTGACAAAATTGAT
CAAAAATTTAATCAAGCATGGGAAAACTATGGCTTTAATATCGAAGAAATCGCACATGAAGCACAGCATCCACAAGGTGT
TGTCACTTCACTATTGCAATTAGATATTGAAAATCTACTGAATGCAGACTATGAGTTTGAAAAACGCGTCAAACTGGAAT
TCCCTGTCTATATTCAAGCATTGATTACCGAGGCAAGTTCTTTAATTGAGCATACGCATAATCGAGCAGCTCAAGGCGTT
CATGATTATGTCTTGCAATTAAAGCCTGCTTATGAACAATTACTTGAAAAACCTGAATTACTGCATCTGGATTATGCCTT
TGATATTTTTGGACAGGCACACCAGCAAGTCATTCATTTATTTGATACCTTGGCAGCAGGGCAGCGAGTAAGCTTGGGAC
AAGAGCAACTCAATGTGATTCATGAGTTGCAAGACTTTGTTCAACAAGATATTGAAACAGCGATTACGGATAAGAAAGTA
TCATCTGAGCTAAGTGCTGATAAAGTAAGTGCTGAACCTGAGACTGTTTCCATTGAGCCTGTTGCGGTATCAGAGCCAAA
TGTTTCAACATTTGATTTATCGTCAATTTCTGCACGTATTCAACAAGATCATCAGCACCTAGATTCAGAGCAAGCCAATC
GTAATTTCGATGCAGACCTTCTCGATATCTTTTTAGAAGAAGCTGATGAGCTGTTGGTCGGTATTGACGCAGACTTAAAC
ACTTGGTCGCAGCAACAAAGTAATACGTCTGCCTTGAATAATTTGATGCGCTATTTACACACCTTAAAAGGTGGCGCAAA
TATGGTTCAGGCAACCCATATGGGACTGATTGCGCATGAGTTAGAAACCATTTATCAACGCTTGATTCATGGGCAAATAC
ATTCTTCTGAAAATATGATACAGATTATTCGTCTGGTACAAGATGATATTGCTGATCGGATTCAAACGTTGCGTGATGAA
GCAGTAGATTATCCAGCGACAGAAGTGATTGAGTTGCTTGGAAATATTGAGCAGGTTCTACAAGGGGTACCACAGCAACA
GCCTGAGAGTGCAACGCGGACTACTTCTGTTGATAGTACCTTGGCGCAAGTTGTTGCTGAGCCACCAACTGAAGTTGTTG
AGCATGAATTAACGGCAGATCATCTTGAATCAGTTGCTCTTGGTGAACCAACATCAGGCGTGGAGTCTGATGCAGTTGTT
GCTGAGGAACAATTACAGGATTCGACTTCCGCTGCGAATGATGCGCTAGAAAGTCAAGCATCGATTTCAAATACCAATGT
TGATATCGATAATACCAAACCGTATCAAGATACAGATCCTGATGATGTTCAATCTTTGGTGGAAGCGACTTTCTATGAAG
AAGCGGCAGAGTTGCTTGATGCTGGACAGCAACTTCTCAATCGCTGGTTTGATGAACGGACTAACCGAAGTATTTTGCTT
CAATTGCAACGTACAGTGCATAGCTTAAAAGGTGGTGCACGAATGGCAGAATTAGAGCCTGTTGCAGTAATTGCCTCACA
TCTTGAAAATGCCTTTGAGCAATTTGCAGTAAAAGCCTTTAGTTCCAATGCTTATGACCATCTCTTGCTGACGGCATTTA
CATGGTTAAAGGCAGCTATTTTTGAACGTTCATATAATAACTATGATGGTTTAAAGCATACCTTAGAACGTCTTCAATTT
GTCGATACCAATGCGCAAATTCCAACTAAACTGGCTCGCGCGGATCTATTCTCGCAAGAACAAGTGATGGAGTTTGTACA
GGGAGATGGTACAGAACCGCCATCTATGCTGGGTGAATGGGACAACACCGTACAGGCTGATGATTCAAATGAGATGATCC
GTGTTTCTGCGGATCTGATCGAAAAAATGATTAACTTGTCTGGTGAAAATGCCATTAACCGTTCGCGTATCCAAATGGAT
TTGGGACAGTTAGGCAATACACTGGTCGAAATGGAATTGGCGATTCAACGTTTGGCAGATCAGTTACGCCGAATGGAAGG
CGAATTAGAAAGTCAGATTATCGCCAAGCATGGGGCAGAAAACTTACGTTATATCGACTTTGACCCATTAGAAATGGATC
AATATTCATCATTGAATCAACTGTCAAAATCACTTGCTGAATCTGCATCGGATTTGGTTGACTTCAAAACCACATTATCC
GACAAAATTCGTGATACAGAAGGTTTGTTATTACAACAATCACGTATTCAGGCTGAAATTCAGGAAAGTCTGATGCGTAC
CCGATTAGTTCCGTTCTCACGACTTTTACCTCGCTTACAGCGTATTGTGCGTCAGACTGCAAGTAGTTTGAACCGTCCAG
CTGAATTGGTGGTCAATAATACCGAAGGCGAACTGGATCGAAATATCTTGGAACGCTTGGTCACGCCACTTGAACACATG
CTGCGAAATGCAGTCGATCATGGGGTAGAAGATCGTGAAGAGCGTTTAAAACTGGGTAAACCTGAAATAGGGCGTATTGA
GCTAAATATTAGCCGCCAAGGAACAGATGTTCTGGTGAGCTTTAGCGATGATGGTAAAGGTATTGATGTTAATAAAATCA
AAGCCAAAGCTTTAGAAAATGGTTTGATGACTGAGGATCAAAAACTCGAAGCACAGGAAATTTTGCAGTACATTTTCCAT
CCTGGGTTTAGTACAGCGACCTCAGTGACCCAAATTTCAGGACGTGGTGTTGGTCTGGATGTGGTGCAAAGTAGTATTAA
GGCGCTTGGTGGTCATGTTAGTGTCGATTCAACATTCGGCTCTGGTACCACTTTTACTATTCGTGTACCAACGACTGTGG
CAGTGAGTGATGCACTCATGGTGAAAGTCGGTGATCAGCAATTTGCCTTGCCTTTGGCTCAGATTGACCGAATTGTGCGT
ATTGCGCCTGCAACTCTTGAACGCTATTTCCATGGTCAGGATGATTATTTTAATATCGATAATACTCCATATCGTTTACG
TTATCTGGCGGAGTTTGTCAGCAATCAGCCTATTCCAAAATTATCTGGTATTGCACATTCATTACCTGTGTTATTGGTTA
AAGGCGCGCATGGTCAGACCATTGCGTTATTGGTCGATCAATTGGTCGGTTCGCGTGCACAAATTGTAGTGAAACCAATC
GGACGACAGTTCGCAAGTATTGGCGCTGTTGCTGGGGCGACAATTTTAGGTGATGGTCATGTTTGTCTCATTCTGGATGG
ACAAAACATTGCACGTCAGATCCAATCGACACAACGTAATAAACAAGTTGTTGAAGGCAGAGAAAAAACACGTCATACCG
ATGAACGTCGTCTGATCATGATCGTAGATGACTCGGTGACTGTCCGTAAAGTTACTTCGCGGCTACTGGAACGTCAGGGC
TTTGATGTGGTGACGGCCAAAGATGGTGTCGACGCCATGGAACAGCTTGAAAATGTCAAACCTGATTTGATGTTGCTGGA
TATTGAAATGCCTCGCATGGATGGTTTTGAGGTGACTAATCTGGTACGCCATCATGAGTTACATCAGGATATGCCAATTA
TCATGATCACATCACGTACTGGTGAAAAACATCGTGAACGTGCATTGTCACTTGGCGTAACGCATTACATGGGTAAACCG
TTCCAAGAATCAGAATTGCTTGAGAATATTGAAGCATTACTTGAAACAGCTTCAGGGAGTTACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.14

100

0.613