Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LSO58_RS01845 Genome accession   NZ_CP089044
Coordinates   421063..421389 (+) Length   108 a.a.
NCBI ID   WP_004995304.1    Uniprot ID   A0A3F3L3D3
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 416063..426389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS01820 (LSO58_01815) hemC 416292..417209 (+) 918 WP_005001836.1 hydroxymethylbilane synthase -
  LSO58_RS01825 (LSO58_01820) - 417235..418017 (+) 783 WP_263503656.1 uroporphyrinogen-III synthase -
  LSO58_RS01830 (LSO58_01825) - 418014..418850 (+) 837 WP_263503657.1 hypothetical protein -
  LSO58_RS01835 (LSO58_01830) - 418860..420047 (+) 1188 WP_263503658.1 heme biosynthesis protein HemY -
  LSO58_RS01840 (LSO58_01835) - 420056..420490 (+) 435 WP_005001845.1 acyl-CoA thioesterase -
  LSO58_RS01845 (LSO58_01840) hns 421063..421389 (+) 327 WP_004995304.1 H-NS family nucleoid-associated regulatory protein Regulator
  LSO58_RS01850 (LSO58_01845) gspN 421554..422297 (+) 744 WP_263503659.1 type II secretion system protein N -
  LSO58_RS01855 (LSO58_01850) - 422297..423130 (+) 834 WP_262545257.1 type II secretion system protein N -
  LSO58_RS01860 (LSO58_01855) gspD 423173..425446 (+) 2274 WP_010588791.1 type II secretion system secretin GspD -
  LSO58_RS01865 (LSO58_01860) - 425516..426169 (+) 654 WP_010588790.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12432.09 Da        Isoelectric Point: 4.8700

>NTDB_id=634765 LSO58_RS01845 WP_004995304.1 421063..421389(+) (hns) [Acinetobacter ursingii strain RIVM_C010761]
MKPDISELSVDELKRLQEEAEALIASKKDQAIEDAYNQILAVAEAVGFTVEELLEYGEQKRKKTTRKAVEPRYRNKNNPE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=634765 LSO58_RS01845 WP_004995304.1 421063..421389(+) (hns) [Acinetobacter ursingii strain RIVM_C010761]
ATGAAACCAGATATTAGTGAACTTTCGGTTGATGAGTTAAAACGGTTGCAAGAAGAAGCTGAGGCATTAATTGCATCTAA
AAAAGATCAGGCAATTGAAGATGCTTATAATCAAATTTTAGCAGTTGCTGAGGCAGTGGGCTTTACGGTTGAAGAATTAC
TTGAGTATGGTGAGCAAAAGCGTAAAAAAACTACGCGTAAAGCCGTTGAGCCGCGCTACCGTAATAAAAATAATCCAGAA
GAAACTTGGACTGGTCGTGGTAAACAACCTCGCTGGCTTGTTGCTGAACTTGAAAAAGGTGCAAAACTTGAAGACTTCTT
GATCTAG

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L3D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889