Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LSO59_RS15180 Genome accession   NZ_CP089038
Coordinates   3237904..3240132 (+) Length   742 a.a.
NCBI ID   WP_004991560.1    Uniprot ID   A0A3F3LDL5
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3232904..3245132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS15155 (LSO59_15130) lnt 3233301..3234860 (+) 1560 WP_004991547.1 apolipoprotein N-acyltransferase -
  LSO59_RS15160 (LSO59_15135) - 3234926..3235264 (-) 339 WP_004991549.1 tRNA-binding protein -
  LSO59_RS15165 (LSO59_15140) - 3235397..3235735 (-) 339 WP_004991552.1 hypothetical protein -
  LSO59_RS15170 (LSO59_15145) gspG 3236066..3236518 (-) 453 WP_004991554.1 type II secretion system major pseudopilin GspG -
  LSO59_RS15175 (LSO59_15150) gspF 3236542..3237747 (-) 1206 WP_004991557.1 type II secretion system inner membrane protein GspF -
  LSO59_RS15180 (LSO59_15155) priA 3237904..3240132 (+) 2229 WP_004991560.1 primosomal protein N' Machinery gene
  LSO59_RS15185 (LSO59_15160) - 3240221..3242074 (+) 1854 WP_004994185.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LSO59_RS15190 (LSO59_15165) - 3242125..3243000 (+) 876 WP_004991565.1 Hsp33 family molecular chaperone HslO -
  LSO59_RS15195 (LSO59_15170) - 3243171..3244115 (+) 945 WP_119686140.1 DnaJ C-terminal domain-containing protein -
  LSO59_RS15200 (LSO59_15175) - 3244127..3244456 (+) 330 WP_004991571.1 chaperone modulator CbpM -
  LSO59_RS15205 (LSO59_15180) - 3244550..3245071 (+) 522 WP_005001233.1 ClbS/DfsB family four-helix bundle protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84630.94 Da        Isoelectric Point: 8.6594

>NTDB_id=634746 LSO59_RS15180 WP_004991560.1 3237904..3240132(+) (priA) [Acinetobacter ursingii strain RIVM_C011601]
MPNTPPPQTEIYRIRVAVPVYLYETFDYSLTQAQYQQAQVGARVAIPFGRQKLIGIITEKIAPDVPLDSRFQLKAIFELL
DDDAILDDKVLTLLTWSAQYYQFPIGEVMQAALPALLRQGKPLDILAHIWKIKPCEDAESKLKRSQKQFEAYQILKLHPT
GTTENILNLSGVETATLRALAKKDLVECHLETQDFRPTPVQLAQMPLTPNDDQKKAIQHVVQSLHHYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFHCDVALMHSGLNDSKRLQAWQQAKMGKASIILGTRSAIYTP
LHNLGLIILDEEHDISYKQQEGFRYHARDVALYRGHLENCPVILGSATPSIDSYHLVEQEKLKLLQLNQRAGVALMPKMH
VIDLKVAKKKQGLSQQLIEQIKKKLDKKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYTYLHCHHCGTI
QRLPDQCPECQHQSLKTLGMGTGKVEEHLNELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNQPMILLGTQMLAKGHHFP
FVTLVAILDIDAGLLSVDVRAPERTAQLIVQVSGRAGRGEHKGDVYLQTLRPDHPMLTTLIEKDYRAVAKHMLQERKAAL
LPPYRYAVLIRSDSKNRDYSQQFLADIAAQLQLMAQDSIEIWGPIPAPMERKAGRYRAHMVILSQDRARMHFFLRQWWAQ
VVHLPKQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=634746 LSO59_RS15180 WP_004991560.1 3237904..3240132(+) (priA) [Acinetobacter ursingii strain RIVM_C011601]
ATGCCAAACACGCCGCCACCTCAAACAGAGATTTACCGTATTCGGGTCGCTGTACCTGTCTATCTGTATGAGACCTTTGA
TTACAGCTTAACTCAGGCTCAATATCAACAGGCTCAGGTTGGCGCGCGCGTGGCAATTCCTTTCGGTCGGCAAAAACTGA
TTGGCATCATTACCGAGAAAATCGCGCCAGATGTTCCACTGGATTCACGGTTTCAGCTCAAAGCTATTTTTGAGTTGCTT
GATGATGATGCCATTTTAGATGACAAAGTTTTAACTTTGTTGACATGGTCAGCACAGTATTATCAGTTTCCGATTGGGGA
GGTGATGCAAGCGGCTTTGCCTGCACTGTTACGACAAGGCAAACCATTGGATATTTTGGCGCATATCTGGAAAATCAAAC
CTTGTGAAGATGCAGAATCCAAACTTAAACGCTCGCAAAAGCAATTTGAAGCCTATCAAATTTTAAAATTACACCCAACT
GGAACGACCGAAAATATTTTAAATTTAAGTGGAGTAGAAACTGCGACTTTACGCGCTTTGGCAAAAAAGGATCTGGTCGA
ATGTCATTTAGAAACACAAGATTTTCGACCGACACCCGTTCAATTGGCACAAATGCCCCTCACTCCCAACGATGATCAGA
AAAAAGCCATTCAACATGTGGTTCAGTCGCTCCATCATTATCAAGCTTTTTTACTGGACGGCTTAACAGGCAGTGGCAAA
ACCGAAGTCTATCTACACATCATGCATGAGGTGTTGAAACAAGGGAAGCAAGTGTTGGTTTTAGTGCCTGAAATCGGACT
AACCCCACAAACCATTTCCCGATTTAAATCGCGTTTTCATTGTGATGTTGCGTTGATGCATTCGGGCTTAAACGACTCCA
AACGTCTGCAAGCATGGCAACAAGCCAAAATGGGTAAAGCTTCAATCATTTTAGGCACACGCTCTGCTATTTATACGCCT
TTGCATAATCTTGGTTTAATCATTTTGGATGAAGAACACGATATTTCCTACAAACAACAGGAAGGTTTTCGTTATCATGC
ACGGGATGTGGCGCTGTATCGAGGGCACTTAGAAAACTGCCCTGTTATTTTAGGCTCAGCCACACCAAGTATTGATAGTT
ACCATCTGGTCGAACAGGAAAAATTAAAACTGCTACAACTCAATCAACGTGCGGGTGTGGCACTTATGCCCAAAATGCAT
GTGATTGATTTAAAGGTTGCCAAGAAAAAGCAAGGGTTGAGTCAACAACTGATTGAGCAAATCAAAAAAAAACTGGATAA
AAAAGAACAAGTGCTCATTTTTCTGAATCGTCGGGGTTATGCACCTGTTTTGGTTTGCGAAAGCTGTGGCTGGCAAGCCA
ATTGTCCACATTGTGATGCGCATTTTACGCTGCATACTCAACCTTACACTTATCTGCATTGTCACCATTGCGGTACGATT
CAGCGCTTACCCGATCAATGTCCAGAGTGTCAGCATCAGAGCCTAAAGACTCTCGGAATGGGAACAGGTAAAGTTGAAGA
ACATTTGAATGAACTTTTTCCAGATCATGATGTGATTCGGGTCGACCGCGACAGCACCAGTCGGGTCGGAAGCTGGCAGA
AAATTTATGATCGGATTCAGCAAAATCAACCCATGATCTTGCTGGGTACACAAATGCTCGCCAAAGGTCATCATTTTCCT
TTTGTCACCTTGGTTGCGATTTTAGATATTGATGCAGGTTTACTGTCTGTCGATGTTCGTGCACCTGAACGTACTGCACA
ATTGATTGTACAAGTGTCTGGTCGCGCTGGGCGGGGGGAACATAAAGGTGACGTTTATTTACAGACATTGAGACCTGATC
ATCCCATGCTCACCACGCTGATCGAAAAAGATTATCGTGCTGTCGCCAAACATATGCTGCAAGAGCGTAAAGCTGCATTG
TTGCCTCCTTATCGTTATGCAGTATTGATTCGTTCAGATTCTAAAAACCGTGACTATAGTCAGCAATTCTTAGCCGACAT
CGCAGCCCAATTACAGTTAATGGCGCAGGATAGTATTGAGATTTGGGGGCCTATTCCCGCGCCGATGGAACGCAAAGCTG
GACGCTATCGGGCGCATATGGTGATCTTGTCGCAAGATCGCGCACGTATGCACTTCTTTTTACGGCAATGGTGGGCGCAA
GTGGTACATTTACCTAAACAGCATCAATTACGTTTATCGATTGATGTTGATCCACAGGAATTTAACTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3LDL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.402

100

0.814