Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LSO59_RS03045 Genome accession   NZ_CP089038
Coordinates   613685..618310 (+) Length   1541 a.a.
NCBI ID   WP_263505641.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 608685..623310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS03020 (LSO59_03015) - 609133..609780 (-) 648 WP_004992472.1 hypothetical protein -
  LSO59_RS03025 (LSO59_03020) pilG 610086..610469 (+) 384 WP_004992473.1 twitching motility response regulator PilG Regulator
  LSO59_RS03030 (LSO59_03025) - 610497..610865 (+) 369 WP_004992474.1 response regulator -
  LSO59_RS03035 (LSO59_03030) - 610871..611407 (+) 537 WP_004992475.1 chemotaxis protein CheW -
  LSO59_RS03040 (LSO59_03035) - 611455..613536 (+) 2082 WP_004992476.1 methyl-accepting chemotaxis protein -
  LSO59_RS03045 (LSO59_03040) chpA 613685..618310 (+) 4626 WP_263505641.1 Hpt domain-containing protein Regulator
  LSO59_RS03050 (LSO59_03045) - 618310..618762 (+) 453 WP_004992479.1 hypothetical protein -
  LSO59_RS03055 (LSO59_03050) - 618897..619061 (-) 165 WP_004992481.1 hypothetical protein -
  LSO59_RS03060 (LSO59_03055) - 619081..620286 (-) 1206 WP_262727357.1 RtcB family protein -
  LSO59_RS03065 (LSO59_03060) - 620591..622051 (-) 1461 WP_044434726.1 amino acid permease -
  LSO59_RS03070 (LSO59_03065) - 622065..623084 (-) 1020 WP_263505740.1 class I SAM-dependent methyltransferase -

Sequence


Protein


Download         Length: 1541 a.a.        Molecular weight: 172954.25 Da        Isoelectric Point: 4.3858

>NTDB_id=634730 LSO59_RS03045 WP_263505641.1 613685..618310(+) (chpA) [Acinetobacter ursingii strain RIVM_C011601]
MKEILKHLVEKISLPEDSFLDQDEEILEIFIEELEEIFQELGQLIPQWVADSDEQQVLADVRRHFHTLKGSGRMVGAKSS
SELAWTVEEALNRIIAKTLPLSADLQRFVQVVFNVYRFKFYHDFKNTQPHSIDIRPLVLLGQQLQHQQDVEPALEELLDL
AEQLNTESGITGLEIQQQQIIEAEQPVEVEPAAIADTCVDAVASSDDSLIEETMAIFLEEAEEHLQTIDTFLQQDEPSDQ
SYNQLIRALHTLRGSSSMAHIQQVFEASSKVETLFKTLMQDELESTSNETALLTHYAEFVRDYLHTLHQKGSQQQLDKID
QKFNQAWENYGFNIEEIAHEAQHPQGVVTSLLQLDIENLLNADYEFEKRVKLEFPVYIQALITEASSLIEHTHNRAAQGV
HDYVLQLKPAYEQLLEKPELLHLDYAFDIFGQAHQQVIHLFDTLAAGQRVSLGQEQLNVIHELQDFVQQDIETAITDKKV
SSELSADKVSAEPETVSIEPVAVSEPNVSTFDLSSISARIQQDHQHLDSEQANRNFDADLLDIFLEEADELLVGIDADLN
TWSQQQSNTSALNNLMRYLHTLKGGANMVQATHMGLIAHELETIYQRLIHGQIHSSENMIQIIRLVQDDIADRIQTLRDE
AVDYPATEVIELLGNIEQVLQGVPQQQPESATRTTSVDSTLAQVVAEPPTEVVEHELTADHLESVALGEPTSGVESDAVV
AEEQLQDSTSAANDALESQASISNTNVDIDNTKPYQDTDPDDVQSLVEATFYEEAAELLDAGQQLLNRWFDERTNRSILL
QLQRTVHSLKGGARMAELEPVAVIASHLENAFEQFAVKAFSSNAYDHLLLTAFTWLKAAIFERSYNNYDGLKHTLERLEF
VDTNAQIPTKLARADLFSQEQVMEFVQGDGTEPPSMLGEWDNTVQADDSNEMIRVSADLIEKMINLSGENAINRSRIEMD
LGQLGNTLVEMELAIQRLADQLRRMEGELESQIIAKHGTENLRYIDFDPLEMDQYSSLNQLSKSLAESASDLVDFKTTLS
DKIRDTEGLLLQQSRIQAEIQESLMRTRLVPFSRLLPRLQRIVRQTASSLNRPAELVVNNTEGELDRNILERLVTPLEHM
LRNAVDHGVEDREERLKLGKPEIGRIELNISRQGTDVLVSFSDDGKGIDVNKIKAKALENGLMTEDQKLEAQEILQYIFH
PGFSTATSVTQISGRGVGLDVVQSSIKALGGHVSVDSTFGSGTTFTIRVPTTVAVSDALMVKVGDQQFALPLAQIDRIVR
IAPATLERYFHGQDDYFNIDNTPYRLRYLAEFVSNQPIPKLSGIAHSLPVLLVKGAHGQTIALLVDQLVGSRAQIVVKPI
GRQFASIGAVAGATILGDGHVCLILDGQNIARQIQSTQRNKQVVEGREKIRHTDERRLIMIVDDSVTVRKVTSRLLERQG
FDVVTAKDGVDAMEQLENVKPDLMLLDIEMPRMDGFEVTNLVRHHELHQDMPIIMITSRTGEKHRERALSLGVTHYMGKP
FQESELLENIEALLETASGSY

Nucleotide


Download         Length: 4626 bp        

>NTDB_id=634730 LSO59_RS03045 WP_263505641.1 613685..618310(+) (chpA) [Acinetobacter ursingii strain RIVM_C011601]
ATGAAAGAAATATTAAAACATCTTGTTGAAAAAATAAGCTTACCTGAAGACAGTTTTCTTGATCAGGATGAAGAAATTCT
TGAAATTTTTATTGAAGAATTAGAAGAAATTTTTCAAGAATTGGGTCAACTTATTCCGCAGTGGGTGGCTGATTCTGATG
AGCAGCAGGTTTTAGCGGACGTTCGTCGCCATTTTCATACTCTAAAAGGGTCTGGTCGAATGGTGGGGGCGAAATCTTCC
AGTGAACTGGCGTGGACAGTTGAAGAAGCACTCAATCGAATTATTGCCAAAACTTTGCCATTAAGTGCAGATTTACAACG
TTTTGTGCAAGTGGTATTTAATGTTTATCGTTTTAAATTTTATCATGATTTTAAAAATACCCAGCCACACTCTATCGATA
TTCGTCCATTGGTTTTGTTGGGACAGCAGTTACAACACCAACAAGACGTCGAGCCTGCTTTAGAAGAATTACTCGATTTA
GCTGAACAGTTAAATACAGAATCTGGAATTACAGGGCTCGAAATTCAGCAACAACAGATCATTGAAGCTGAACAGCCAGT
TGAAGTAGAGCCTGCTGCCATAGCTGACACCTGTGTGGACGCAGTTGCTTCATCAGATGATAGTCTGATTGAAGAAACCA
TGGCGATTTTCCTTGAAGAAGCAGAAGAACATCTACAAACAATTGATACTTTTTTACAGCAAGATGAGCCATCAGATCAA
AGTTATAATCAATTGATTCGCGCTTTGCATACTTTGCGCGGTAGTTCATCGATGGCGCATATTCAGCAAGTATTTGAAGC
CAGCAGCAAGGTAGAAACGCTGTTTAAAACCTTGATGCAAGATGAGCTTGAGTCGACTTCAAATGAAACAGCGCTCTTAA
CCCACTACGCTGAATTTGTTCGAGATTATCTACATACACTGCACCAAAAGGGCTCTCAACAACAGCTTGACAAAATTGAT
CAAAAATTTAATCAAGCATGGGAAAACTATGGCTTTAATATCGAAGAAATCGCACATGAAGCACAGCATCCACAAGGTGT
TGTCACTTCACTATTGCAATTAGATATTGAAAATCTACTGAATGCAGACTATGAGTTTGAAAAACGCGTCAAACTGGAAT
TCCCTGTCTATATTCAAGCATTGATTACCGAGGCAAGTTCTTTAATTGAGCATACGCATAATCGAGCAGCTCAAGGCGTT
CATGATTATGTCTTGCAATTAAAGCCTGCTTATGAACAATTACTTGAAAAACCTGAATTACTGCATCTGGATTATGCCTT
TGATATTTTTGGACAGGCACACCAGCAAGTCATTCATTTATTTGATACCTTGGCAGCAGGGCAGCGAGTAAGCTTGGGAC
AAGAGCAACTCAATGTGATTCATGAGTTGCAAGACTTTGTTCAACAAGATATTGAAACAGCGATTACGGATAAGAAAGTA
TCATCTGAGCTAAGTGCTGATAAAGTAAGTGCTGAACCTGAGACTGTTTCCATTGAGCCTGTTGCGGTATCAGAGCCAAA
TGTTTCAACATTTGATTTATCGTCAATTTCTGCACGTATTCAACAAGATCATCAGCACCTAGATTCAGAGCAAGCCAATC
GTAATTTCGATGCAGACCTTCTCGATATCTTTTTAGAAGAAGCTGATGAGCTGTTGGTCGGTATTGACGCAGACTTAAAC
ACTTGGTCGCAGCAACAAAGTAATACGTCTGCCTTGAATAATTTGATGCGCTATTTACACACCTTAAAAGGTGGCGCAAA
TATGGTTCAGGCAACCCATATGGGACTGATTGCGCATGAGTTAGAAACCATTTATCAACGCTTGATTCATGGGCAAATAC
ATTCTTCTGAAAATATGATACAGATTATTCGTCTGGTACAAGATGATATTGCTGATCGGATTCAAACGTTGCGTGATGAA
GCAGTAGATTATCCAGCGACAGAAGTGATTGAGTTGCTTGGAAATATTGAGCAGGTTCTACAAGGGGTACCACAGCAACA
GCCTGAGAGTGCAACGCGGACTACTTCTGTTGATAGTACCTTGGCGCAAGTTGTTGCTGAGCCACCAACTGAAGTTGTTG
AGCATGAATTAACGGCAGATCATCTTGAATCAGTTGCTCTTGGTGAACCAACATCAGGCGTGGAGTCTGATGCAGTTGTT
GCTGAGGAACAATTACAGGATTCGACTTCCGCTGCGAATGATGCGCTAGAAAGTCAAGCATCGATTTCAAATACCAATGT
TGATATCGATAATACCAAACCGTATCAAGATACAGATCCTGATGATGTTCAATCTTTGGTGGAAGCGACTTTCTATGAAG
AAGCGGCAGAGTTGCTTGATGCTGGACAGCAACTTCTCAATCGCTGGTTTGATGAACGGACTAACCGAAGTATTTTGCTT
CAATTGCAACGTACAGTGCATAGCTTAAAAGGTGGTGCACGAATGGCAGAATTAGAGCCTGTTGCAGTAATTGCCTCACA
TCTTGAAAATGCCTTTGAGCAATTTGCAGTAAAAGCCTTTAGTTCCAATGCTTATGACCATCTCTTGCTGACGGCATTTA
CATGGTTAAAGGCAGCTATTTTTGAACGTTCATATAATAACTATGATGGTTTAAAGCATACCTTAGAACGTCTTGAATTT
GTCGATACCAATGCGCAAATTCCAACTAAACTGGCTCGCGCGGATCTATTCTCGCAAGAACAAGTGATGGAATTTGTACA
GGGAGATGGTACAGAACCGCCATCTATGCTGGGTGAATGGGACAACACCGTACAGGCTGATGATTCAAATGAGATGATCC
GTGTTTCTGCGGATCTGATCGAAAAAATGATTAACTTGTCTGGTGAAAATGCCATTAACCGTTCGCGTATCGAAATGGAT
TTGGGACAGTTAGGCAATACACTGGTCGAAATGGAATTGGCGATTCAACGTTTGGCAGATCAGTTACGCCGAATGGAAGG
CGAATTAGAAAGTCAGATTATCGCCAAACATGGGACAGAAAACTTACGTTATATCGACTTTGATCCATTAGAAATGGATC
AATATTCATCATTGAATCAACTGTCAAAATCACTTGCTGAATCTGCATCGGATTTGGTTGACTTCAAAACCACATTATCC
GACAAAATTCGTGATACCGAAGGTTTGTTATTACAACAATCACGTATTCAGGCTGAAATTCAGGAAAGTCTGATGCGTAC
CCGATTAGTTCCGTTCTCACGACTTTTACCTCGCTTACAGCGTATTGTGCGTCAGACGGCAAGTAGTTTGAACCGTCCAG
CTGAATTGGTGGTCAATAATACCGAAGGCGAACTGGATCGAAATATCTTGGAACGCTTGGTCACGCCACTTGAACACATG
CTGCGAAATGCAGTCGATCATGGGGTAGAAGATCGTGAAGAGCGTTTAAAACTGGGTAAACCTGAAATAGGACGTATTGA
GCTAAATATTAGCCGCCAAGGAACAGATGTTTTGGTGAGCTTTAGCGATGATGGTAAAGGTATTGATGTTAATAAAATCA
AAGCCAAAGCTTTAGAAAATGGTTTGATGACTGAGGATCAAAAACTCGAAGCACAGGAAATTTTGCAGTACATTTTCCAT
CCTGGGTTTAGTACAGCGACCTCAGTGACCCAAATTTCAGGACGTGGTGTGGGTCTGGATGTGGTGCAAAGTAGTATTAA
GGCGCTTGGTGGTCATGTCAGTGTCGATTCAACATTCGGCTCTGGTACCACTTTTACTATTCGTGTACCAACGACTGTGG
CAGTGAGTGATGCACTCATGGTGAAAGTCGGTGATCAGCAATTTGCCTTGCCTTTGGCCCAGATTGACCGAATTGTGCGT
ATTGCGCCTGCAACTCTTGAACGCTATTTTCATGGTCAGGATGATTATTTTAATATCGATAATACTCCATATCGTTTACG
TTATCTGGCGGAGTTTGTCAGCAATCAGCCTATTCCAAAATTATCTGGTATTGCACATTCATTACCTGTGTTATTGGTTA
AAGGCGCGCATGGTCAGACCATCGCGTTATTGGTTGATCAATTGGTCGGTTCGCGTGCACAAATTGTAGTGAAACCAATC
GGAAGGCAGTTCGCAAGTATTGGCGCTGTTGCTGGGGCGACAATTTTAGGTGATGGTCATGTTTGTCTAATTTTGGATGG
ACAAAACATTGCACGTCAGATCCAATCGACACAACGTAATAAACAAGTTGTTGAAGGCAGAGAAAAAATACGTCATACCG
ATGAACGTCGTCTTATCATGATCGTAGATGACTCGGTGACTGTCCGTAAAGTTACTTCACGGCTCTTGGAACGTCAGGGC
TTTGATGTAGTGACGGCCAAAGATGGTGTCGATGCCATGGAACAGCTTGAAAATGTCAAACCTGATTTGATGTTGTTGGA
TATTGAAATGCCTCGCATGGATGGTTTTGAGGTGACTAATCTGGTACGCCATCATGAGTTACATCAGGATATGCCAATTA
TCATGATCACATCACGTACTGGTGAAAAACATCGTGAACGGGCATTATCACTTGGCGTAACGCATTACATGGGTAAACCG
TTCCAAGAATCAGAATTGCTTGAGAATATTGAAGCATTACTTGAAACAGCTTCAGGGAGTTACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.14

100

0.613