Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LSO59_RS02730 Genome accession   NZ_CP089038
Coordinates   549451..550332 (+) Length   293 a.a.
NCBI ID   WP_004985439.1    Uniprot ID   A0AA46PCG1
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 544451..555332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS02705 (LSO59_02700) wrbA 545645..546235 (+) 591 WP_004985428.1 NAD(P)H:quinone oxidoreductase -
  LSO59_RS02710 (LSO59_02705) - 546414..546788 (-) 375 WP_004985429.1 hypothetical protein -
  LSO59_RS02715 (LSO59_02710) - 546983..547558 (-) 576 WP_004985432.1 xanthine phosphoribosyltransferase -
  LSO59_RS02720 (LSO59_02715) - 547645..548361 (-) 717 WP_004985435.1 DUF3108 domain-containing protein -
  LSO59_RS02725 (LSO59_02720) - 548517..549212 (-) 696 WP_004985437.1 hypothetical protein -
  LSO59_RS02730 (LSO59_02725) tonB2 549451..550332 (+) 882 WP_004985439.1 energy transducer TonB Machinery gene
  LSO59_RS02735 (LSO59_02730) ybeY 550357..550836 (-) 480 WP_004985442.1 rRNA maturation RNase YbeY -
  LSO59_RS02740 (LSO59_02735) - 550915..551997 (-) 1083 WP_004985450.1 PhoH family protein -
  LSO59_RS02745 (LSO59_02740) miaB 552038..553489 (-) 1452 WP_004985452.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33261.89 Da        Isoelectric Point: 9.6666

>NTDB_id=634728 LSO59_RS02730 WP_004985439.1 549451..550332(+) (tonB2) [Acinetobacter ursingii strain RIVM_C011601]
MFKKNVGYFPVIRHWWQDSILLAAIAIAIVLHIFVLLIHFAMPAPSDTATKEIAVSIRPSTDQVEHADFLAQANQKGSGK
FHDSHRMSSDMPKAMPDQSSGESPTQTLDHIQQQRELKFEEKVLMTVLSWQKQAEENQRKKAQDDLQSQFQAKAAMVASI
EAQYLQRQQNFSRQQRIKTVDGIQAKQDASAAYLNKFREKVELYGNRYYPDEAKQQNLAGEVRLMVVLNAQGGIRAIRLI
ESSGHPILDEAAKASVRRGAPFGRFDAGMKDISELRIIRTWKFNPAQAEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=634728 LSO59_RS02730 WP_004985439.1 549451..550332(+) (tonB2) [Acinetobacter ursingii strain RIVM_C011601]
ATGTTTAAAAAAAATGTAGGTTATTTTCCAGTTATTCGACACTGGTGGCAGGATTCTATTTTATTGGCTGCAATTGCGAT
TGCAATCGTGCTGCATATTTTCGTTTTGCTGATTCATTTCGCCATGCCTGCGCCATCGGATACTGCGACCAAAGAAATTG
CAGTATCGATTCGTCCAAGTACTGATCAGGTTGAGCATGCCGACTTTTTAGCACAGGCAAATCAAAAAGGATCTGGAAAA
TTTCATGATTCTCACCGTATGTCGAGTGATATGCCCAAAGCCATGCCTGATCAAAGCTCAGGTGAGTCACCAACACAAAC
CCTTGACCATATTCAGCAACAACGTGAGCTAAAATTTGAAGAAAAAGTGCTGATGACGGTATTAAGCTGGCAAAAACAAG
CGGAAGAAAACCAGCGAAAAAAAGCACAGGATGATTTACAAAGCCAGTTTCAAGCTAAAGCAGCCATGGTCGCGAGCATT
GAGGCGCAATATTTACAGCGTCAGCAGAATTTTAGCCGACAGCAACGGATTAAAACCGTAGATGGTATTCAAGCCAAGCA
AGATGCATCAGCAGCCTATTTAAATAAATTTCGTGAAAAAGTGGAACTTTATGGCAACCGTTATTATCCAGATGAAGCCA
AACAACAAAATTTAGCAGGTGAAGTTCGACTCATGGTGGTGCTGAATGCACAAGGCGGCATTCGTGCGATTCGTTTAATC
GAGAGTTCTGGACATCCAATACTGGATGAGGCTGCCAAAGCATCGGTACGCCGTGGCGCACCGTTTGGTCGTTTTGATGC
AGGAATGAAAGATATTTCCGAATTACGGATTATCCGAACATGGAAATTTAACCCAGCACAGGCTGAGTTTGAAGTGCATT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

77.551

100

0.778