Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LSO59_RS01775 Genome accession   NZ_CP089038
Coordinates   377333..377659 (+) Length   108 a.a.
NCBI ID   WP_004995304.1    Uniprot ID   A0A3F3L3D3
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 376410..376784 377333..377659 flank 549


Gene organization within MGE regions


Location: 376410..377659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS01775 (LSO59_01770) hns 377333..377659 (+) 327 WP_004995304.1 H-NS family nucleoid-associated regulatory protein Regulator

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12432.09 Da        Isoelectric Point: 4.8700

>NTDB_id=634724 LSO59_RS01775 WP_004995304.1 377333..377659(+) (hns) [Acinetobacter ursingii strain RIVM_C011601]
MKPDISELSVDELKRLQEEAEALIASKKDQAIEDAYNQILAVAEAVGFTVEELLEYGEQKRKKTTRKAVEPRYRNKNNPE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=634724 LSO59_RS01775 WP_004995304.1 377333..377659(+) (hns) [Acinetobacter ursingii strain RIVM_C011601]
ATGAAACCAGATATTAGTGAACTTTCGGTTGATGAGTTAAAACGGTTGCAAGAAGAAGCTGAGGCATTAATTGCATCTAA
AAAAGATCAGGCAATTGAAGATGCTTATAATCAAATTTTAGCAGTTGCTGAGGCAGTGGGCTTTACGGTTGAAGAATTAC
TTGAGTATGGTGAGCAAAAGCGTAAAAAAACTACGCGTAAAGCCGTTGAGCCGCGCTACCGTAATAAAAATAATCCAGAA
GAAACTTGGACAGGTCGTGGTAAACAACCTCGCTGGCTTGTTGCTGAACTTGAAAAAGGTGCAAAACTTGAAGACTTCTT
GATCTAG

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L3D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889