Detailed information NTG0634683

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N8A97_RS07270
• Genome accession: NZ_CP104901
• Coordinates: 1527680..1528684 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DB-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1522680..1533684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N8A97_RS07240 (N8A97_07245)	fghA	1522772..1523623 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
N8A97_RS07245 (N8A97_07250)	ispF	1523694..1524167 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N8A97_RS07250 (N8A97_07255)	truD	1524164..1525231 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
N8A97_RS07255 (N8A97_07260)	surE	1525219..1525968 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
N8A97_RS07260 (N8A97_07265)	-	1526001..1526636 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N8A97_RS07265 (N8A97_07270)	-	1526682..1527575 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
N8A97_RS07270 (N8A97_07275)	rpoS	1527680..1528684 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
N8A97_RS07275 (N8A97_07280)	fdxA	1529111..1529434 (-)	324	WP_003119354.1	ferredoxin FdxA	-
N8A97_RS07280 (N8A97_07285)	mutS	1529501..1532068 (-)	2568	WP_071536927.1	DNA mismatch repair protein MutS	-
N8A97_RS07285 (N8A97_07290)	-	1532194..1533201 (-)	1008	WP_010793357.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=634683 N8A97_RS07270 WP_003113871.1 1527680..1528684(+) (rpoS) [Pseudomonas aeruginosa strain DB-1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=634683 N8A97_RS07270 WP_003113871.1 1527680..1528684(+) (rpoS) [Pseudomonas aeruginosa strain DB-1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653