Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N8A97_RS01925 Genome accession   NZ_CP104901
Coordinates   416566..417921 (+) Length   451 a.a.
NCBI ID   WP_033988018.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411566..422921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A97_RS01905 (N8A97_01905) - 412403..412969 (-) 567 WP_003117889.1 hypothetical protein -
  N8A97_RS01910 (N8A97_01910) rsmD 412972..413568 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N8A97_RS01915 (N8A97_01915) - 413568..415055 (-) 1488 WP_003102862.1 M16 family metallopeptidase -
  N8A97_RS01920 (N8A97_01920) - 415048..416445 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  N8A97_RS01925 (N8A97_01925) pilA 416566..417921 (+) 1356 WP_033988018.1 signal recognition particle-docking protein FtsY Machinery gene
  N8A97_RS01930 (N8A97_01930) ftsE 417918..418589 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  N8A97_RS01935 (N8A97_01935) ftsX 418589..419596 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  N8A97_RS01940 (N8A97_01940) rpoH 419710..420564 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  N8A97_RS01945 (N8A97_01945) - 420629..421234 (+) 606 WP_003084511.1 hypothetical protein -
  N8A97_RS01950 (N8A97_01950) mtgA 421239..421970 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  N8A97_RS01955 (N8A97_01955) - 422007..422384 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  N8A97_RS01960 (N8A97_01960) thiS 422487..422687 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48027.42 Da        Isoelectric Point: 4.5525

>NTDB_id=634667 N8A97_RS01925 WP_033988018.1 416566..417921(+) (pilA) [Pseudomonas aeruginosa strain DB-1]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAPVAEA
PLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASI
GEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVD
VAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAV
QAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKL
DGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=634667 N8A97_RS01925 WP_033988018.1 416566..417921(+) (pilA) [Pseudomonas aeruginosa strain DB-1]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCGCCGGTTGCCGAAGCA
CCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACCCGAGCCTAT
CCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCTCTGGCCGCCGCTC
CGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATC
GGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCT
GACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCG
ACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGAC
GTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAA
GAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGG
TCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTG
CAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGA
GGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCG
GCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTG
GACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGA
GGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(246-445)

SRP54-type protein, helical bundle domain (SRP54_N)

(161-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.018

96.674

0.455