Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BTOYO_RS22970 Genome accession   NC_022781
Coordinates   4506137..4506424 (+) Length   95 a.a.
NCBI ID   WP_000648323.1    Uniprot ID   A0A1V6LCK0
Organism   Bacillus toyonensis BCT-7112     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4501137..4511424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTOYO_RS22950 (Btoyo_4566) - 4502219..4502416 (+) 198 WP_000362892.1 DUF4083 domain-containing protein -
  BTOYO_RS22955 (Btoyo_4567) - 4502546..4503007 (+) 462 WP_000796419.1 NUDIX hydrolase -
  BTOYO_RS22960 (Btoyo_4568) nadE 4503050..4503868 (-) 819 WP_000174898.1 ammonia-dependent NAD(+) synthetase -
  BTOYO_RS22965 (Btoyo_4569) - 4504142..4506022 (+) 1881 WP_001026012.1 FtsX-like permease family protein -
  BTOYO_RS22970 (Btoyo_4570) abrB 4506137..4506424 (+) 288 WP_000648323.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BTOYO_RS22975 (Btoyo_4571) - 4506685..4507635 (+) 951 WP_001089053.1 serine protease -
  BTOYO_RS22980 (Btoyo_4572) - 4507676..4507984 (-) 309 WP_001259900.1 ArsR/SmtB family transcription factor -
  BTOYO_RS22985 (Btoyo_4573) - 4508092..4509026 (+) 935 Protein_4521 aldo/keto reductase -
  BTOYO_RS22990 (Btoyo_4574) - 4509273..4509497 (-) 225 WP_000162608.1 hypothetical protein -
  BTOYO_RS22995 (Btoyo_4575) - 4509582..4509929 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  BTOYO_RS23000 (Btoyo_4576) - 4510124..4510651 (+) 528 WP_001019819.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10635.40 Da        Isoelectric Point: 5.8675

>NTDB_id=63466 BTOYO_RS22970 WP_000648323.1 4506137..4506424(+) (abrB) [Bacillus toyonensis BCT-7112]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVDEDKVILQKYEPYNACQITGDVSDQNISLANGNITVSIDGAK
HLIKEIEKFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=63466 BTOYO_RS22970 WP_000648323.1 4506137..4506424(+) (abrB) [Bacillus toyonensis BCT-7112]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTAAGAGATGTATTAGG
GATACAAATTAAATCACCACTTGAAATTTTCGTAGATGAAGATAAAGTCATTTTACAAAAATATGAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAGAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAAATAGAGAAATTTTTAAAAAAAAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V6LCK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

95.789

0.537

Multiple sequence alignment