Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   N7761_RS06955 Genome accession   NZ_CP104882
Coordinates   1367569..1368036 (+) Length   155 a.a.
NCBI ID   WP_080996256.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDHaas10a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362569..1373036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7761_RS06920 (N7761_06920) tolQ 1362740..1363429 (+) 690 WP_005545584.1 protein TolQ -
  N7761_RS06925 (N7761_06925) tolR 1363515..1363937 (+) 423 WP_005545585.1 colicin uptake protein TolR -
  N7761_RS06930 (N7761_06930) tolA 1363954..1365162 (+) 1209 WP_262088907.1 cell envelope integrity protein TolA -
  N7761_RS06935 (N7761_06935) tolB 1365197..1366477 (+) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -
  N7761_RS06940 (N7761_06940) pal 1366492..1366959 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  N7761_RS06955 (N7761_06955) comO 1367569..1368036 (+) 468 WP_080996256.1 hypothetical protein Machinery gene
  N7761_RS06960 (N7761_06960) - 1368209..1368493 (-) 285 Protein_1342 Fic family protein -
  N7761_RS06965 (N7761_06965) - 1368546..1368785 (-) 240 WP_020752103.1 hypothetical protein -
  N7761_RS06970 (N7761_06970) parA 1368778..1369419 (-) 642 WP_005572802.1 ParA family partition ATPase -
  N7761_RS06975 (N7761_06975) - 1369444..1369578 (-) 135 WP_020752104.1 hypothetical protein -
  N7761_RS06980 (N7761_06980) - 1369839..1370006 (+) 168 WP_005555900.1 hypothetical protein -
  N7761_RS06985 (N7761_06985) - 1370003..1370287 (+) 285 WP_005545764.1 hypothetical protein -
  N7761_RS06990 (N7761_06990) - 1370349..1370831 (-) 483 WP_020752106.1 hypothetical protein -
  N7761_RS06995 (N7761_06995) - 1370922..1371254 (-) 333 WP_020752107.1 TrbM/KikA/MpfK family conjugal transfer protein -
  N7761_RS07000 (N7761_07000) - 1371238..1371675 (-) 438 WP_014167954.1 cag pathogenicity island Cag12 family protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 18159.81 Da        Isoelectric Point: 9.5418

>NTDB_id=634649 N7761_RS06955 WP_080996256.1 1367569..1368036(+) (comO) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
MISLCDPARKIAFRLFFSMLYSFKVRSKKGTFIGGNYKGDACVVNGRNNTREIERELFGYRLNQNMLETRLTYKSAVKQN
CTQEECRRYTQQSACHYGGWADLLDEKEYEISQLSFDWLSEQKGIKIRLSGRFKRHKQIEYETSMIVPLLNGAKE

Nucleotide


Download         Length: 468 bp        

>NTDB_id=634649 N7761_RS06955 WP_080996256.1 1367569..1368036(+) (comO) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
ATGATTTCACTTTGCGATCCTGCTCGCAAAATTGCCTTTCGTTTATTTTTCTCCATGCTTTATTCCTTTAAAGTGCGGTC
AAAAAAAGGAACGTTTATCGGCGGAAATTATAAAGGCGATGCTTGTGTTGTGAACGGGCGTAACAATACAAGAGAAATTG
AGCGCGAATTGTTCGGCTATCGACTTAACCAAAACATGCTGGAAACTCGTTTGACCTACAAAAGTGCGGTGAAGCAAAAC
TGCACACAAGAAGAATGCCGCCGTTATACGCAACAATCCGCGTGCCATTACGGTGGTTGGGCAGATTTACTGGACGAGAA
AGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTGTCGGAACAAAAGGGGATTAAAATTCGCCTCAGTGGACGTTTTA
AACGACATAAACAGATCGAATATGAAACCTCCATGATCGTGCCTTTATTAAACGGAGCCAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

44.371

97.419

0.432