Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   N7761_RS01885 Genome accession   NZ_CP104882
Coordinates   381213..384044 (+) Length   943 a.a.
NCBI ID   WP_005543937.1    Uniprot ID   A0A142G045
Organism   Aggregatibacter actinomycetemcomitans strain IDHaas10a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 376213..389044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7761_RS01860 (N7761_01860) comE 376339..377748 (+) 1410 WP_050846294.1 type IV pilus secretin PilQ Machinery gene
  N7761_RS01865 (N7761_01865) aroK 377962..378489 (+) 528 WP_005555432.1 shikimate kinase AroK -
  N7761_RS01870 (N7761_01870) aroB 378513..379601 (+) 1089 WP_005569125.1 3-dehydroquinate synthase -
  N7761_RS01875 (N7761_01875) - 379604..380458 (+) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  N7761_RS01880 (N7761_01880) ssb 380564..381043 (-) 480 WP_014167545.1 single-stranded DNA-binding protein Machinery gene
  N7761_RS01885 (N7761_01885) uvrA 381213..384044 (+) 2832 WP_005543937.1 excinuclease ABC subunit UvrA Machinery gene
  N7761_RS01890 (N7761_01890) - 384149..384488 (+) 340 Protein_369 transposase -
  N7761_RS01895 (N7761_01895) - 384485..385291 (+) 807 WP_162199730.1 IS3 family transposase -
  N7761_RS01900 (N7761_01900) - 385368..385778 (-) 411 WP_005589530.1 MerR family transcriptional regulator -
  N7761_RS01905 (N7761_01905) - 385899..386210 (-) 312 WP_005544590.1 DciA family protein -
  N7761_RS01910 (N7761_01910) secM 386302..386619 (+) 318 WP_005544588.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104420.29 Da        Isoelectric Point: 7.1443

>NTDB_id=634624 N7761_RS01885 WP_005543937.1 381213..384044(+) (uvrA) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
MDTIDIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPHHHVPLTAQTISQMVDKVLSLPEDSKMMLLAPVVKERKG
EHVKLLQQIAAQGYIRARIDGEICDLSDPPKLELHKKHTIEVVVDRFKVRSDLATRLAESFETTLELSGGTAVVAYMDDP
KAEELVFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEKRVVQNPNISLANGAIKGWDRRNFYYYQM
LTSLSKHYHFDIETPFEALPKKIQQIILNGSGKEEIEFQYMNDRGDVVLRRHAFEGILNNMARRYKETESMSVREELAKH
ISNRPCADCGGSRLRPEARNVYIEQTNLPEVSEKSIGEALDFFGDLQLSGQKAQIAEKILKEIKERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAILSADHIIDI
GPGAGVHGGSVIAEGTAQQIMQNPNSLTGKFLSGTEKIEIPKKRTALDKKKMLKLFGASGNNLKNVNLDIPVGLFTCITG
VSGSGKSTLINDTLFPIAQNALNRAENAEVSPYKSIKGLEFFDKVIDINQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEDAREFF
DAIPMIARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLSVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKMEGSHTARFLKEILAKG

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=634624 N7761_RS01885 WP_005543937.1 381213..384044(+) (uvrA) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]
ATGGATACCATCGACATTCGTGGGGCGCGAACCCACAATCTGAAAAATATTAACTTAACCATTCCACGCGACAAACTTAT
CGTTATCACCGGTTTATCCGGTTCGGGCAAGTCTTCGCTGGCGTTTGATACCCTGTATGCGGAAGGACAACGCCGTTATG
TGGAATCCCTTTCTGCCTATGCGCGCCAGTTTCTGTCATTAATGGAAAAGCCTGATGTGGACCACATTGAAGGGCTTTCA
CCGGCGATTTCCATTGAGCAAAAATCCACCTCCCATAACCCGCGTTCAACGGTGGGGACGATTACCGAAATTCATGATTA
CCTGCGTTTATTGTTTGCCCGCGTGGGCGAACCGCGCTGTCCGCATCATCATGTTCCACTCACCGCGCAAACCATCAGCC
AAATGGTGGATAAAGTACTTTCCCTGCCGGAAGACAGCAAAATGATGCTGTTGGCACCGGTGGTGAAAGAACGCAAAGGC
GAACACGTTAAGCTGTTGCAACAAATTGCCGCACAAGGTTACATTCGCGCCCGTATCGATGGCGAAATTTGTGATTTATC
CGATCCACCGAAACTGGAATTACATAAAAAACACACTATTGAAGTGGTGGTGGATCGCTTTAAAGTGCGGTCGGATTTAG
CCACAAGATTGGCGGAATCCTTTGAAACCACGTTGGAATTATCGGGCGGCACGGCAGTGGTTGCCTACATGGACGATCCG
AAAGCGGAAGAGTTGGTGTTCTCCGCCAACTTTGCCTGCCCCCATTGCGGCTACTCCGTGCCGGAACTGGAACCGCGTCT
GTTTTCCTTCAATAACCCGGCAGGGGCGTGTCCGACCTGCGACGGTTTAGGCGTGCAGCAATATTTTGATGAAAAACGCG
TGGTGCAAAATCCGAACATTTCCCTTGCCAACGGCGCCATTAAAGGCTGGGATCGCCGTAATTTTTATTATTATCAAATG
CTCACTTCCCTCTCGAAACACTACCATTTCGACATAGAAACCCCGTTTGAAGCATTACCGAAAAAAATCCAACAGATTAT
TTTGAATGGTTCCGGCAAGGAAGAAATCGAGTTTCAATACATGAACGATCGCGGCGATGTGGTGCTGCGTCGCCACGCCT
TTGAAGGGATTTTGAACAACATGGCGCGCCGTTATAAAGAAACGGAATCCATGTCGGTGCGCGAAGAACTCGCCAAACAC
ATCAGCAACCGCCCGTGCGCCGATTGCGGCGGTTCCCGCTTACGCCCGGAAGCGCGCAATGTATATATTGAACAAACCAA
CCTGCCGGAGGTGTCGGAAAAAAGCATCGGTGAAGCGTTAGATTTCTTCGGCGATTTACAGCTCAGCGGGCAAAAAGCCC
AAATCGCCGAAAAAATCCTGAAAGAGATAAAAGAGCGGTTACAATTTTTAGTGAATGTAGGCTTGAATTATCTTTCCCTT
TCCCGCTCTGCCGAAACCCTTTCTGGCGGTGAAGCACAACGGATTCGCCTCGCCAGCCAAATCGGCGCAGGATTAGTGGG
TGTGATGTACGTGTTGGATGAACCCTCCATCGGCTTGCACCAACGGGACAATGAACGCCTGCTTAACACGCTGATTCATT
TGCGTAATTTAGGCAATACAGTAATCGTGGTGGAACATGACGAAGACGCCATTTTGAGCGCCGACCACATTATCGACATC
GGACCGGGCGCCGGCGTGCACGGAGGTAGCGTCATCGCCGAAGGCACCGCACAACAAATCATGCAAAATCCGAATTCCCT
CACGGGTAAATTTTTATCGGGCACGGAAAAGATCGAAATACCGAAAAAACGTACCGCACTTGATAAGAAAAAAATGCTCA
AATTGTTCGGCGCTTCCGGTAACAACCTGAAAAACGTCAATTTAGACATTCCCGTGGGCTTATTTACCTGCATCACCGGC
GTGTCCGGTTCAGGTAAATCTACACTGATTAACGACACTCTGTTCCCTATTGCACAAAACGCCTTGAATCGTGCAGAAAA
TGCCGAGGTATCGCCGTACAAGTCCATTAAAGGTTTGGAATTTTTCGATAAAGTTATTGATATTAACCAAAGCCCGATTG
GACGCACGCCACGCTCCAACCCGGCAACTTACACGGGCGTATTCACGCCGATTCGCGAACTGTTTGCCGGCGTACCGGAA
GCCCGTGCGCGCGGTTATAACCCGGGGCGTTTCAGTTTTAACGTGCGCGGCGGGCGCTGTGAAGCCTGCCAGGGCGACGG
CGTAATCAAAGTGGAAATGCACTTCCTGCCCGATGTGTACGTGCCTTGCGACCAATGTAAAGGCAAGCGTTACAATCGCG
AAACCCTGGAAATCCGCTACAAAGGTAAAACCATTCATCAGGTGCTGGACATGACGGTGGAAGATGCGCGCGAGTTTTTC
GATGCCATTCCAATGATTGCGCGTAAATTGCAAACCCTGATTGACGTGGGCTTGTCTTATATTCGCTTGGGGCAATCCTC
TACCACCCTGTCCGGCGGGGAAGCGCAACGGGTGAAACTGGCGACGGAACTCTCCAAACGGGATACGGGCAAAACCCTGT
ATATTCTGGACGAACCGACCACAGGGCTGCATTTTGCCGACATTAAACAATTGCTTTCCGTGTTACACCGTTTACGCGAT
CAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGA
AGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCC
GCTTCCTCAAAGAGATTTTGGCAAAAGGCTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G045

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.447

99.682

0.573
  uvrA Streptococcus pneumoniae TIGR4

57.447

99.682

0.573
  uvrA Streptococcus pneumoniae D39

57.447

99.682

0.573