Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   N8A75_RS09095 Genome accession   NZ_CP104878
Coordinates   1747434..1747865 (+) Length   143 a.a.
NCBI ID   WP_128753581.1    Uniprot ID   -
Organism   Bacillus subtilis strain 4ZT     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742434..1752865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS09075 (N8A75_09075) spoVS 1742994..1743254 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  N8A75_RS09080 (N8A75_09080) tdh 1743521..1744564 (+) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  N8A75_RS09085 (N8A75_09085) kbl 1744577..1745755 (+) 1179 WP_015252071.1 glycine C-acetyltransferase -
  N8A75_RS09090 (N8A75_09090) miaB 1745903..1747432 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  N8A75_RS09095 (N8A75_09095) ymcA 1747434..1747865 (+) 432 WP_128753581.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  N8A75_RS09100 (N8A75_09100) cotE 1748127..1748672 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  N8A75_RS09105 (N8A75_09105) hexA 1748805..1751381 (+) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.32 Da        Isoelectric Point: 5.2978

>NTDB_id=634533 N8A75_RS09095 WP_128753581.1 1747434..1747865(+) (ymcA) [Bacillus subtilis strain 4ZT]
MTLYSKKDIVKQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=634533 N8A75_RS09095 WP_128753581.1 1747434..1747865(+) (ymcA) [Bacillus subtilis strain 4ZT]
ATGACGCTCTACTCAAAAAAAGACATTGTGAAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

99.301

100

0.993