Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N8A75_RS06715 Genome accession   NZ_CP104878
Coordinates   1291139..1292275 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain 4ZT     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1286139..1297275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS06695 (N8A75_06695) uxaA 1286595..1288088 (+) 1494 WP_014479540.1 UxaA family hydrolase -
  N8A75_RS06700 (N8A75_06700) yjnA 1288127..1288891 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  N8A75_RS06705 (N8A75_06705) bstD 1289110..1289574 (-) 465 WP_014479541.1 DinB family protein -
  N8A75_RS06710 (N8A75_06710) yjoB 1289723..1290994 (+) 1272 WP_003245490.1 ATPase YjoB -
  N8A75_RS06715 (N8A75_06715) rapC 1291139..1292275 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  N8A75_RS06720 (N8A75_06720) phrA 1292265..1292399 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  N8A75_RS06725 (N8A75_06725) yjpA 1292430..1292676 (-) 247 Protein_1263 YciI family protein -
  N8A75_RS06730 (N8A75_06730) xlyB 1292797..1293750 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  N8A75_RS06735 (N8A75_06735) yjqA 1293790..1294167 (-) 378 WP_014479546.1 PH domain-containing protein -
  N8A75_RS06740 (N8A75_06740) pghB 1294272..1294874 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  N8A75_RS06745 (N8A75_06745) xpdC 1294951..1295787 (+) 837 WP_003245071.1 manganese catalase family protein -
  N8A75_RS06750 (N8A75_06750) xkdA 1295831..1296427 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  N8A75_RS06755 (N8A75_06755) xre 1296590..1296931 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=634512 N8A75_RS06715 WP_015252291.1 1291139..1292275(+) (rapC) [Bacillus subtilis strain 4ZT]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=634512 N8A75_RS06715 WP_015252291.1 1291139..1292275(+) (rapC) [Bacillus subtilis strain 4ZT]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418