Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   N8A75_RS06230 Genome accession   NZ_CP104878
Coordinates   1206667..1208496 (+) Length   609 a.a.
NCBI ID   WP_206734712.1    Uniprot ID   -
Organism   Bacillus subtilis strain 4ZT     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201667..1213496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS06195 (N8A75_06195) yjbC 1202339..1202917 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  N8A75_RS06200 (N8A75_06200) spx 1203098..1203493 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  N8A75_RS06205 (N8A75_06205) yjbE 1203536..1204192 (-) 657 WP_003232944.1 TerC family protein -
  N8A75_RS06210 (N8A75_06210) - 1204362..1204502 (+) 141 WP_119122854.1 hypothetical protein -
  N8A75_RS06215 (N8A75_06215) mecA 1204469..1205125 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  N8A75_RS06220 (N8A75_06220) - 1205120..1205242 (-) 123 WP_003245684.1 hypothetical protein -
  N8A75_RS06225 (N8A75_06225) coiA 1205286..1206437 (+) 1152 WP_046380934.1 competence protein CoiA Machinery gene
  N8A75_RS06230 (N8A75_06230) pepF 1206667..1208496 (+) 1830 WP_206734712.1 oligoendopeptidase F Regulator
  N8A75_RS06235 (N8A75_06235) - 1208534..1208701 (-) 168 WP_003244944.1 hypothetical protein -
  N8A75_RS06240 (N8A75_06240) spxH 1209016..1209915 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  N8A75_RS06245 (N8A75_06245) bhbI 1209912..1210310 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  N8A75_RS06250 (N8A75_06250) cwlQ 1210565..1211299 (-) 735 WP_250621098.1 bifunctional muramidase/murein lytic transglycosylase -
  N8A75_RS06255 (N8A75_06255) yjbK 1211314..1211886 (-) 573 WP_015252351.1 CYTH domain-containing protein -
  N8A75_RS06260 (N8A75_06260) - 1212011..1212379 (+) 369 WP_015252350.1 hypothetical protein -
  N8A75_RS06265 (N8A75_06265) yjbM 1212408..1213043 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70185.08 Da        Isoelectric Point: 5.2218

>NTDB_id=634511 N8A75_RS06230 WP_206734712.1 1206667..1208496(+) (pepF) [Bacillus subtilis strain 4ZT]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDRMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=634511 N8A75_RS06230 WP_206734712.1 1206667..1208496(+) (pepF) [Bacillus subtilis strain 4ZT]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATCTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCACTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGTGTGTTAAATAACGCAGATAT
AACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAATACAATGGCCACGACG
CTTAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATATGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATCTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACCGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCTGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476