Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LRZ83_RS15535 Genome accession   NZ_CP088985
Coordinates   3163568..3164164 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 53334     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3158568..3169164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRZ83_RS15520 (LRZ83_15520) helD 3158776..3160830 (-) 2055 WP_014907883.1 DNA helicase IV -
  LRZ83_RS15525 (LRZ83_15525) - 3160955..3161401 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LRZ83_RS15530 (LRZ83_15530) yccS 3161419..3163554 (+) 2136 WP_073557904.1 YccS family putative transporter -
  LRZ83_RS15535 (LRZ83_15535) sxy/tfoX 3163568..3164164 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LRZ83_RS15540 (LRZ83_15540) sulA 3164513..3165022 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LRZ83_RS15545 (LRZ83_15545) ompA 3165375..3166445 (+) 1071 WP_002898408.1 porin OmpA -
  LRZ83_RS15550 (LRZ83_15550) matP 3166577..3167029 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LRZ83_RS15555 (LRZ83_15555) - 3167215..3168972 (+) 1758 WP_073557905.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=634430 LRZ83_RS15535 WP_004179217.1 3163568..3164164(-) (sxy/tfoX) [Klebsiella pneumoniae strain 53334]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=634430 LRZ83_RS15535 WP_004179217.1 3163568..3164164(-) (sxy/tfoX) [Klebsiella pneumoniae strain 53334]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51