Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PALA9_RS25365 Genome accession   NZ_CP104870
Coordinates   5426023..5426517 (-) Length   164 a.a.
NCBI ID   WP_003292123.1    Uniprot ID   A0ABY1WHY7
Organism   Pseudomonas aeruginosa strain PALA9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5421023..5431517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA9_RS25350 (PALA9_05016) comEC 5421456..5422334 (-) 879 WP_019486743.1 ComEC/Rec2 family competence protein Machinery gene
  PALA9_RS25355 (PALA9_05017) - 5422336..5424585 (-) 2250 WP_196495448.1 Mov34/MPN/PAD-1 family protein -
  PALA9_RS25360 (PALA9_05018) - 5424594..5425754 (-) 1161 WP_019486741.1 hypothetical protein -
  PALA9_RS25365 (PALA9_05019) radC 5426023..5426517 (-) 495 WP_003292123.1 RadC family protein Machinery gene
  PALA9_RS25370 (PALA9_05020) - 5426713..5427456 (-) 744 WP_019485626.1 DsbA family protein -
  PALA9_RS25375 (PALA9_05021) - 5427470..5430358 (-) 2889 WP_023083165.1 conjugative transfer ATPase -
  PALA9_RS25380 (PALA9_05022) - 5430358..5430792 (-) 435 WP_023083166.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17848.54 Da        Isoelectric Point: 6.6460

>NTDB_id=634418 PALA9_RS25365 WP_003292123.1 5426023..5426517(-) (radC) [Pseudomonas aeruginosa strain PALA9]
MSLVIADSRPESLTLIAAQHEDWIIRQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLAFE
PLFKGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=634418 PALA9_RS25365 WP_003292123.1 5426023..5426517(-) (radC) [Pseudomonas aeruginosa strain PALA9]
ATGTCTCTTGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCGGCA
GGCCATCACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCAGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCGCCTTCGAG
CCGCTGTTCAAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTGGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCATCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGCGATCACCGAGCGGCTGA
AGAGCGCCCTGGCCACCGTCGATGTCCGGGTACTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTGTTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421