Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LRZ78_RS17180 Genome accession   NZ_CP088982
Coordinates   3526916..3527512 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain 53357     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3521916..3532512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRZ78_RS17165 (LRZ78_17170) helD 3522124..3524178 (-) 2055 WP_014907883.1 DNA helicase IV -
  LRZ78_RS17170 (LRZ78_17175) - 3524303..3524749 (+) 447 WP_014907884.1 YccF domain-containing protein -
  LRZ78_RS17175 (LRZ78_17180) yccS 3524767..3526902 (+) 2136 WP_002898422.1 YccS family putative transporter -
  LRZ78_RS17180 (LRZ78_17185) sxy/tfoX 3526916..3527512 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LRZ78_RS17185 (LRZ78_17190) - 3527603..3527818 (+) 216 WP_009485781.1 hypothetical protein -
  LRZ78_RS17190 (LRZ78_17195) sulA 3527861..3528370 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LRZ78_RS17195 (LRZ78_17200) ompA 3528723..3529793 (+) 1071 WP_002898408.1 porin OmpA -
  LRZ78_RS17200 (LRZ78_17205) matP 3529925..3530377 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LRZ78_RS17205 (LRZ78_17210) - 3530563..3532320 (+) 1758 WP_014907886.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=634406 LRZ78_RS17180 WP_004179217.1 3526916..3527512(-) (sxy/tfoX) [Klebsiella pneumoniae strain 53357]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=634406 LRZ78_RS17180 WP_004179217.1 3526916..3527512(-) (sxy/tfoX) [Klebsiella pneumoniae strain 53357]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51