Detailed information NTG0063439

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: BTOYO_RS12055
• Genome accession: NC_022781
• Coordinates: 2308738..2310087 (-)
• Length: 449 a.a.
• NCBI ID: WP_000948465.1
• Uniprot ID: -
• Organism: Bacillus toyonensis BCT-7112
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2303738..2315087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTOYO_RS12035 (Btoyo_2394)	secA	2304068..2306575 (-)	2508	WP_000579396.1	preprotein translocase subunit SecA	-
BTOYO_RS12040 (Btoyo_2395)	hpf	2306849..2307391 (-)	543	WP_000671188.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
BTOYO_RS12045 (Btoyo_2396)	cspC	2307710..2307907 (-)	198	WP_002039935.1	cold shock protein CspC	-
BTOYO_RS12050 (Btoyo_2397)	-	2308034..2308738 (-)	705	WP_002093044.1	ComF family protein	-
BTOYO_RS12055 (Btoyo_2398)	comFA	2308738..2310087 (-)	1350	WP_000948465.1	ATP-dependent helicase ComFA	Machinery gene
BTOYO_RS12060 (Btoyo_2399)	-	2310214..2311611 (-)	1398	WP_002093042.1	NlpC/P60 family protein	-
BTOYO_RS12065 (Btoyo_2400)	-	2311771..2312085 (-)	315	WP_000400852.1	winged helix-turn-helix transcriptional regulator	-
BTOYO_RS12070 (Btoyo_2401)	-	2312257..2313099 (-)	843	WP_000844774.1	DegV family protein	-
BTOYO_RS12075	-	2313338..2313972 (+)	635	Protein_2401	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51008.84 Da
• Isoelectric Point: 9.7229

>NTDB_id=63439 BTOYO_RS12055 WP_000948465.1 2308738..2310087(-) (comFA) [Bacillus toyonensis BCT-7112]
MLSGKQLLLEELSTDVRDNLDDLKKKGEVVCVQGVKNKASTYMCQRCGNIAQRLFSSFLCKRCSKFCTYCRKCITMGRVS
ECAVLVRGIAEKKGEMDVNPLQWKGNLSTGQELAVQGVMEAVKQKESFFIWAVCGAGKTEMLFYGIAEALQKGERVCIAT
PRTDVVLELAPRLKEVFPNINVAALYGGSLDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVKQAM
KEKAACIYLTATPDEEWKRNLRKGKQKGIVVSGRYHRHPLPVPKFCWCGNWKKSLINKRIPQVLLQWLKVYLNKKHPIFL
FVPHVRYIEKMSRLLKLLDDRVAGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGTEEEIFSESALV
QIAGRVGRSFEEPYGEVIYFHYGKTEAMVRAKKHIRSMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=63439 BTOYO_RS12055 WP_000948465.1 2308738..2310087(-) (comFA) [Bacillus toyonensis BCT-7112]
ATGTTATCTGGGAAACAGTTATTATTAGAAGAACTCTCTACAGACGTACGGGATAATTTAGATGATTTGAAGAAGAAGGG
AGAGGTCGTATGTGTACAAGGTGTAAAAAATAAGGCTTCTACATATATGTGTCAGCGTTGCGGAAATATAGCACAAAGAC
TCTTTTCATCATTTTTGTGTAAAAGGTGTAGTAAATTCTGCACATATTGCCGGAAGTGCATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGTGGAATTGCTGAAAAAAAGGGAGAAATGGATGTAAACCCGTTACAGTGGAAAGGAAATTT
ATCTACTGGCCAGGAGTTGGCTGTGCAAGGTGTTATGGAGGCTGTTAAACAGAAAGAATCGTTTTTTATTTGGGCTGTGT
GCGGCGCTGGAAAAACAGAAATGTTGTTTTATGGTATTGCAGAGGCACTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTACTTGAATTAGCACCGAGATTGAAAGAAGTATTTCCGAATATAAATGTAGCTGCTTTATACGG
TGGGAGTTTAGATCGGGAAAAAGATGCAGCGTTAGTCGTTGCGACCACCCATCAGCTATTGCGTTATTATAGAGCGTTTC
ATGTCATGATTGTAGATGAAATAGATGCCTTTCCATACCATGCAGATCAAATGTTGCAGTATGCGGTAAAACAAGCGATG
AAAGAGAAGGCGGCATGTATTTATTTAACTGCAACTCCAGATGAAGAGTGGAAGCGTAACCTTAGAAAGGGGAAACAAAA
AGGTATCGTTGTTTCTGGACGGTATCACCGTCATCCGTTGCCAGTCCCCAAATTTTGCTGGTGCGGAAACTGGAAGAAAA
GCCTCATTAATAAAAGAATTCCTCAAGTTTTACTACAATGGTTAAAAGTATACTTAAATAAAAAGCACCCCATTTTTTTA
TTTGTTCCCCATGTGCGATATATAGAAAAAATGAGTCGGTTATTGAAGCTGTTAGACGATAGAGTTGCCGGTGTGCATGC
AGAAGATCCAATGAGAAAAGAAAAAGTTGCAGCTTTCAGAAAGGGAGAAATTCCTTTATTAGTTACAACGACGATTTTGG
AGAGAGGAGTAACGGTGAAAAATTTGCAAGTTGCGGTTTTAGGGACAGAAGAAGAAATATTTTCAGAAAGTGCACTCGTA
CAAATTGCAGGCCGGGTAGGTCGTAGTTTTGAAGAGCCGTATGGAGAGGTCATTTATTTTCATTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACACATTCGAAGTATGAACAAAAATGCGAAAGAACAAGGGTTGATCGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (106-254)

• Helicase conserved C-terminal domain (Helicase_C) (313-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.226	98.441	0.494
comFA	Latilactobacillus sakei subsp. sakei 23K	38.914	98.441	0.383