Detailed information NTG0634372

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA9_RS07395
• Genome accession: NZ_CP104870
• Coordinates: 1579846..1580850 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1574846..1585850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA9_RS07365 (PALA9_01463)	fghA	1574938..1575789 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA9_RS07370 (PALA9_01464)	ispF	1575860..1576333 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA9_RS07375 (PALA9_01465)	truD	1576330..1577397 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
PALA9_RS07380 (PALA9_01466)	surE	1577385..1578134 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA9_RS07385 (PALA9_01467)	-	1578167..1578802 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA9_RS07390 (PALA9_01468)	-	1578848..1579741 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA9_RS07395 (PALA9_01469)	rpoS	1579846..1580850 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA9_RS07400 (PALA9_01470)	fdxA	1581277..1581600 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA9_RS07405 (PALA9_01471)	mutS	1581667..1584234 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA9_RS07410 (PALA9_01472)	-	1584360..1585367 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=634372 PALA9_RS07395 WP_003113871.1 1579846..1580850(+) (rpoS) [Pseudomonas aeruginosa strain PALA9]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=634372 PALA9_RS07395 WP_003113871.1 1579846..1580850(+) (rpoS) [Pseudomonas aeruginosa strain PALA9]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653