Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   PALA9_RS03870 Genome accession   NZ_CP104870
Coordinates   825345..828182 (-) Length   945 a.a.
NCBI ID   WP_003093663.1    Uniprot ID   A0A0H2ZF88
Organism   Pseudomonas aeruginosa strain PALA9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 820345..833182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA9_RS03840 (PALA9_00765) rpsK 820465..820854 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  PALA9_RS03845 (PALA9_00766) rpsD 820871..821491 (+) 621 WP_003093678.1 30S ribosomal protein S4 -
  PALA9_RS03850 (PALA9_00767) - 821514..822515 (+) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  PALA9_RS03855 (PALA9_00768) rplQ 822559..822948 (+) 390 WP_003093672.1 50S ribosomal protein L17 -
  PALA9_RS03860 (PALA9_00769) katA 823230..824678 (+) 1449 WP_003103909.1 catalase KatA -
  PALA9_RS03865 (PALA9_00770) bfr 824809..825273 (+) 465 WP_016852423.1 bacterioferritin -
  PALA9_RS03870 (PALA9_00771) uvrA 825345..828182 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  PALA9_RS03875 (PALA9_00772) - 828396..829784 (+) 1389 WP_003103910.1 MFS transporter -
  PALA9_RS03880 (PALA9_00773) ssb 829801..830298 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PALA9_RS03885 (PALA9_00774) pchA 830387..831817 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  PALA9_RS03890 (PALA9_00775) pchB 831814..832119 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  PALA9_RS03895 (PALA9_00776) pchC 832119..832874 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -

Sequence

Protein


Download         Length: 945 a.a.        Molecular weight: 104489.13 Da        Isoelectric Point: 6.6074

>NTDB_id=634367 PALA9_RS03870 WP_003093663.1 825345..828182(-) (uvrA) [Pseudomonas aeruginosa strain PALA9]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYFQM
LGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELAKF
LSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYLTL
DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDI
GPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITG
VSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEAREFF
DAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRD
HGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2838 bp        

>NTDB_id=634367 PALA9_RS03870 WP_003093663.1 825345..828182(-) (uvrA) [Pseudomonas aeruginosa strain PALA9]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGCCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGCTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAACTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGATGTCGAGGAGATCATATTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCTATCAGCGAGCTGGAACCCAA
GCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACGCGCGCC
GGGTGGTCAACGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTCCAGATG
CTCGGTTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAACACCAGAAGGTGGT
GCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGCTCGCACCCCT
TCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCCAAGTTC
CTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGACCGGAC
GCTGCCGGCGATCACCGCGATGCCGGTCGGCGAAGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCCGTGGCG
AGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC
GACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTGGG
AGTGATGTACATCCTCGATGAACCCTCGATCGGCCTGCACCAACGCGACAACGAACGCCTGCTCGGCACCCTCACCCACC
TACGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTCGACATC
GGTCCGGGGGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGACTCGCT
GACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGCTGCTGA
AGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATCACCGGG
GTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGCGACTAC
CCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCG
GTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG
GCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGGCGACGG
CGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGACGTCTGCAAGGGCAAGCGCTACAACCGCG
AGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAGTTCTTC
GACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACACTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCAGAGCGC
GACCACCCTCTCGGGCGGCGAGGCACAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCCTGT
ACATCCTCGACGAACCGACCACCGGCCTGCACTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTGCGCGAC
CACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGGTCCCGA
GGGCGGCTCCAAGGGTGGTCAGATCATCGCCAACGGCACGCCGGAGCAGGTGGCCGAGATGCCCCAGTCGCACACCGGCC
ACTTCCTCAAGCCGCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZF88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.233

100

0.574
  uvrA Streptococcus pneumoniae TIGR4

57.233

100

0.574
  uvrA Streptococcus pneumoniae D39

57.233

100

0.574