Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LSG23_RS17535 Genome accession   NZ_CP088973
Coordinates   3523831..3524520 (-) Length   229 a.a.
NCBI ID   WP_202980098.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML20-16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3518831..3529520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS17500 (LSG23_17420) fliW 3518922..3519353 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  LSG23_RS17505 (LSG23_17425) - 3519383..3519952 (-) 570 WP_003151397.1 DUF6470 family protein -
  LSG23_RS17510 (LSG23_17430) flgL 3520043..3520960 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LSG23_RS17515 (LSG23_17435) flgK 3520972..3522489 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  LSG23_RS17520 (LSG23_17440) - 3522505..3522987 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LSG23_RS17525 (LSG23_17445) flgM 3523002..3523268 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LSG23_RS17530 (LSG23_17450) - 3523338..3523757 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  LSG23_RS17535 (LSG23_17455) comFC 3523831..3524520 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  LSG23_RS17540 (LSG23_17460) - 3524526..3524810 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  LSG23_RS17545 (LSG23_17465) comFA 3524868..3526253 (-) 1386 WP_077722929.1 DEAD/DEAH box helicase Machinery gene
  LSG23_RS17550 (LSG23_17470) - 3526361..3527209 (-) 849 WP_003151387.1 DegV family protein -
  LSG23_RS17555 (LSG23_17475) degU 3527307..3527996 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LSG23_RS17560 (LSG23_17480) degS 3528073..3529236 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25273.98 Da        Isoelectric Point: 8.4880

>NTDB_id=634329 LSG23_RS17535 WP_202980098.1 3523831..3524520(-) (comFC) [Bacillus velezensis strain CMML20-16]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=634329 LSG23_RS17535 WP_202980098.1 3523831..3524520(-) (comFC) [Bacillus velezensis strain CMML20-16]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603