Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Regulator
Locus tag   LSG23_RS15555 Genome accession   NZ_CP088973
Coordinates   3134422..3136713 (-) Length   763 a.a.
NCBI ID   WP_077722768.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML20-16     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3129422..3141713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS15515 (LSG23_15445) - 3129882..3130313 (+) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -
  LSG23_RS15520 (LSG23_15450) - 3130313..3130654 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  LSG23_RS15525 (LSG23_15455) - 3130647..3132128 (+) 1482 WP_077722766.1 Na+/H+ antiporter subunit D -
  LSG23_RS15530 (LSG23_15460) - 3132134..3132610 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  LSG23_RS15535 (LSG23_15465) - 3132610..3132894 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  LSG23_RS15540 (LSG23_15470) mnhG 3132878..3133252 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LSG23_RS15545 (LSG23_15475) - 3133292..3133675 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  LSG23_RS15550 (LSG23_15480) comA 3133697..3134341 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  LSG23_RS15555 (LSG23_15485) comP 3134422..3136713 (-) 2292 WP_077722768.1 histidine kinase Regulator
  LSG23_RS15560 (LSG23_15490) comX 3136725..3136889 (-) 165 WP_007613432.1 competence pheromone ComX -
  LSG23_RS15565 (LSG23_15495) - 3136889..3137800 (-) 912 WP_031378407.1 polyprenyl synthetase family protein -
  LSG23_RS15570 (LSG23_15500) degQ 3137952..3138092 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LSG23_RS15575 (LSG23_15505) - 3138557..3138898 (+) 342 WP_014305721.1 hypothetical protein -
  LSG23_RS15580 (LSG23_15510) - 3138905..3140125 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 88404.59 Da        Isoelectric Point: 7.3749

>NTDB_id=634325 LSG23_RS15555 WP_077722768.1 3134422..3136713(-) (comP) [Bacillus velezensis strain CMML20-16]
MKSKYNKISVVLILLTLVYVIYLTYISTNNLLVGATISENKQGEIKIKDVEDFTMAYYAGVQKGDIVKNINGQNVKSINI
QMNKLKNVNSMVVDRNGHDIEIKLNLFNDRNFSTYLIPIIFYVVCLFCCFFIIKINEEKNLKSALVLIVFLLSASIAYIS
AGGSAKGDLLSRCIMLLTLITVPLNYLLFLYHYFKELGTVLFSKKVFVLYLFPTINILFELFRSRLSFGDFIPKFNLISF
FLLFLIVAYYFIVILRRNKDTDQAHIIKVLVVINILAFSPFLCLYLIPYVFFNDYYVSSFLTASFMLLIPFSLVYQFMSN
KIYNVDFILSKLKYYGFLALTPTIILVTTIELLREPEENFYNLKLTFLIYILMLAVFYYKEILDFRFKLKRVSERFNYQD
SIYKFTQLIRNSSSLNQVFGELKTTILEVTLTSKVYIFEVTYDGNVKAFDERDSSLIDDYQVLLNSVTVEIGKITEFNQG
FAMKVGERGDRSFVVLCLSKMNTPRLSREEISWLKTLSFYVNVSIENVMKIEELMNHLEDLKKQETNPVWLKKLMFTIEE
KQRSDLARDLHDSVLQDLISLKRQCELFLADFKREEPCQLEVQDKLHQMNEQMSDVILMTRETCHELRPQLLYDLGLVKA
VSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLISIQNKVILHYEDDGVGCNQE
EGGGQSMSMGLSGIKERVRALDGRMKIDTSEGNGFKADIEMEL

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=634325 LSG23_RS15555 WP_077722768.1 3134422..3136713(-) (comP) [Bacillus velezensis strain CMML20-16]
ATGAAGTCCAAGTACAATAAGATTTCAGTTGTCTTAATTCTGCTTACATTGGTATATGTCATTTATCTGACTTATATAAG
CACAAATAATCTTTTAGTCGGCGCCACCATTTCTGAAAATAAACAGGGCGAAATTAAAATAAAAGATGTAGAAGATTTTA
CAATGGCATATTACGCCGGAGTGCAAAAGGGAGATATAGTAAAGAATATTAACGGCCAAAATGTAAAGTCAATTAATATT
CAAATGAATAAGCTGAAAAATGTAAACTCGATGGTCGTTGATAGAAACGGTCATGATATTGAGATTAAGCTCAATTTATT
TAATGATAGGAACTTCAGTACTTACTTAATACCGATAATTTTTTATGTAGTATGTTTATTTTGCTGTTTCTTCATCATCA
AGATAAATGAAGAAAAAAACTTGAAATCTGCTTTGGTGCTAATTGTATTTCTTTTATCTGCTTCAATCGCATATATCAGT
GCTGGAGGATCGGCAAAAGGCGATTTGCTTAGCAGATGCATCATGTTGTTAACATTAATAACTGTACCTTTAAATTATCT
TCTGTTTCTTTATCATTACTTTAAAGAATTAGGTACAGTGCTTTTCAGCAAAAAAGTTTTCGTTTTGTATTTATTTCCAA
CTATAAATATATTATTTGAATTATTTCGGTCGCGATTATCTTTTGGTGATTTTATTCCAAAGTTTAATTTGATTTCGTTT
TTTCTTCTTTTTTTGATTGTAGCATATTACTTTATTGTTATTTTGAGAAGAAACAAAGATACTGATCAGGCACATATTAT
AAAGGTGCTCGTAGTTATAAATATATTGGCATTTTCGCCTTTTTTATGTCTGTATCTTATACCGTATGTATTTTTTAATG
ATTATTATGTCTCTTCTTTCTTAACAGCGTCATTTATGCTGCTGATACCTTTTTCACTTGTATATCAATTCATGTCGAAT
AAAATATATAACGTTGATTTTATCTTAAGTAAGTTAAAATATTACGGCTTTTTAGCGTTAACCCCAACTATAATTCTGGT
TACGACAATTGAGTTATTACGTGAGCCGGAAGAAAATTTTTACAATCTCAAACTGACATTTTTAATTTATATTTTAATGT
TAGCTGTTTTTTATTATAAAGAAATACTCGATTTCCGGTTTAAATTAAAAAGGGTCTCTGAAAGATTCAATTACCAAGAC
AGTATTTATAAGTTTACCCAATTAATCAGAAACTCGTCTTCTTTAAATCAGGTTTTTGGAGAATTAAAAACCACCATTCT
CGAAGTAACTCTTACAAGTAAAGTGTATATATTTGAAGTTACGTATGATGGGAATGTAAAGGCATTTGACGAAAGAGATT
CAAGTTTGATAGATGATTATCAAGTGCTTTTAAATAGTGTTACTGTTGAAATAGGAAAAATAACGGAGTTTAATCAAGGT
TTCGCAATGAAAGTAGGAGAACGGGGAGATAGATCATTCGTTGTTCTCTGTTTGTCTAAGATGAATACGCCCCGTTTATC
ACGTGAAGAAATTTCTTGGTTAAAAACATTATCTTTTTACGTTAATGTTTCAATAGAAAACGTGATGAAAATCGAAGAAC
TTATGAATCATCTCGAAGATTTAAAGAAACAGGAGACAAACCCGGTCTGGCTCAAAAAGCTGATGTTTACAATCGAGGAA
AAGCAGCGTTCGGATTTAGCCCGTGATCTGCATGATTCGGTGCTGCAGGACTTGATTTCTTTGAAGCGTCAGTGTGAGCT
GTTTCTGGCTGATTTTAAAAGAGAAGAGCCTTGCCAGTTAGAGGTGCAGGACAAGCTTCATCAGATGAATGAGCAGATGT
CGGATGTTATTTTGATGACCCGGGAGACGTGCCATGAGCTTCGTCCTCAGCTGCTGTATGATTTGGGTCTGGTCAAGGCG
GTATCCAAGCTTGCCGCGCAGCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTTTACGGCGGCGCT
GGATTTGGATACGCAGCTGAATTTGTACCGCATTATTCAGGAATTTCTTTCGAACGCCATGAAGCATTCACAGGCGAATG
AGGTGCTGATTATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGGTGTCGGCTGCAATCAGGAA
GAAGGCGGCGGACAGTCGATGAGCATGGGTCTTTCGGGTATTAAGGAACGCGTCCGTGCGCTTGACGGACGGATGAAAAT
CGACACAAGTGAAGGAAACGGTTTTAAAGCGGATATTGAAATGGAATTGTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(563-632)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

53.896

100

0.544