Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LSG23_RS12815 Genome accession   NZ_CP088973
Coordinates   2628882..2629649 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML20-16     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2623882..2634649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS12795 (LSG23_12775) - 2624084..2624896 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  LSG23_RS12800 (LSG23_12780) ccpN 2624922..2625560 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  LSG23_RS12805 (LSG23_12785) glyS 2625661..2627700 (-) 2040 WP_077722605.1 glycine--tRNA ligase subunit beta -
  LSG23_RS12810 (LSG23_12790) glyQ 2627693..2628580 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  LSG23_RS12815 (LSG23_12795) recO 2628882..2629649 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  LSG23_RS12820 (LSG23_12800) - 2629686..2629829 (-) 144 WP_007408286.1 YqzL family protein -
  LSG23_RS12825 (LSG23_12805) era 2629985..2630890 (-) 906 WP_007408285.1 GTPase Era -
  LSG23_RS12830 (LSG23_12810) - 2630871..2631281 (-) 411 WP_003152976.1 cytidine deaminase -
  LSG23_RS12835 (LSG23_12815) - 2631405..2631779 (-) 375 WP_038461537.1 diacylglycerol kinase family protein -
  LSG23_RS12840 (LSG23_12820) ybeY 2631760..2632233 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  LSG23_RS12845 (LSG23_12825) - 2632234..2634366 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=634312 LSG23_RS12815 WP_003152982.1 2628882..2629649(-) (recO) [Bacillus velezensis strain CMML20-16]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=634312 LSG23_RS12815 WP_003152982.1 2628882..2629649(-) (recO) [Bacillus velezensis strain CMML20-16]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894