Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LSG23_RS11245 Genome accession   NZ_CP088973
Coordinates   2297869..2298477 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML20-16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2292869..2303477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS11205 (LSG23_11185) - 2293922..2294428 (-) 507 WP_077722504.1 PTS glucose transporter subunit IIA -
  LSG23_RS11210 (LSG23_11190) - 2294567..2294980 (+) 414 WP_070082015.1 Hsp20/alpha crystallin family protein -
  LSG23_RS11215 (LSG23_11195) - 2295010..2295444 (-) 435 WP_077722505.1 YppG family protein -
  LSG23_RS11220 (LSG23_11200) - 2295631..2295813 (+) 183 WP_003153532.1 YppF family protein -
  LSG23_RS11225 (LSG23_11205) - 2295852..2296220 (-) 369 WP_070082017.1 YppE family protein -
  LSG23_RS11230 (LSG23_11210) - 2296266..2296511 (-) 246 WP_039063257.1 DUF5446 family protein -
  LSG23_RS11235 (LSG23_11215) sspM 2296717..2296821 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LSG23_RS11240 (LSG23_11220) - 2296865..2297827 (-) 963 WP_077722506.1 DUF2515 domain-containing protein -
  LSG23_RS11245 (LSG23_11225) recU 2297869..2298477 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  LSG23_RS11250 (LSG23_11230) - 2298516..2301299 (+) 2784 WP_077722507.1 PBP1A family penicillin-binding protein -
  LSG23_RS11255 (LSG23_11235) - 2301377..2301868 (-) 492 WP_070082019.1 YpoC family protein -
  LSG23_RS11260 (LSG23_11240) nth 2301865..2302524 (-) 660 WP_003153517.1 endonuclease III -
  LSG23_RS11265 (LSG23_11245) dnaD 2302543..2303241 (-) 699 WP_070082021.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=634301 LSG23_RS11245 WP_003153521.1 2297869..2298477(+) (recU) [Bacillus velezensis strain CMML20-16]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=634301 LSG23_RS11245 WP_003153521.1 2297869..2298477(+) (recU) [Bacillus velezensis strain CMML20-16]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896