Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LSG23_RS07145 Genome accession   NZ_CP088973
Coordinates   1398278..1398562 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML20-16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393278..1403562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS07125 (LSG23_07110) - 1394524..1395432 (+) 909 WP_077722151.1 ketopantoate reductase family protein -
  LSG23_RS07130 (LSG23_07115) - 1395462..1396694 (-) 1233 WP_070081754.1 aminopeptidase -
  LSG23_RS07135 (LSG23_07120) - 1396795..1396929 (-) 135 WP_003154559.1 protein YkpC -
  LSG23_RS07140 (LSG23_07125) mreBH 1397001..1398008 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  LSG23_RS07145 (LSG23_07130) abrB 1398278..1398562 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LSG23_RS07150 (LSG23_07135) - 1398735..1400039 (+) 1305 WP_077722152.1 ATP-binding protein -
  LSG23_RS07155 (LSG23_07140) - 1400041..1400868 (+) 828 WP_077722153.1 gamma-glutamylcyclotransferase -
  LSG23_RS07160 (LSG23_07145) ktrC 1400909..1401574 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LSG23_RS07165 (LSG23_07150) ade 1401723..1403456 (+) 1734 WP_077722154.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=634295 LSG23_RS07145 WP_024085249.1 1398278..1398562(+) (abrB) [Bacillus velezensis strain CMML20-16]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=634295 LSG23_RS07145 WP_024085249.1 1398278..1398562(+) (abrB) [Bacillus velezensis strain CMML20-16]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543