Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LSG23_RS07035 Genome accession   NZ_CP088973
Coordinates   1377782..1378378 (+) Length   198 a.a.
NCBI ID   WP_077722143.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML20-16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372782..1383378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS07005 (LSG23_06990) - 1372996..1373451 (+) 456 WP_077722141.1 flavodoxin -
  LSG23_RS07010 (LSG23_06995) dapD 1373533..1374243 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LSG23_RS07015 (LSG23_07000) - 1374314..1375438 (+) 1125 WP_070081744.1 N-acetyldiaminopimelate deacetylase -
  LSG23_RS07020 (LSG23_07005) - 1375499..1375744 (+) 246 WP_003154596.1 YkuS family protein -
  LSG23_RS07025 (LSG23_07010) - 1375778..1376584 (-) 807 WP_060386912.1 mechanosensitive ion channel family protein -
  LSG23_RS07030 (LSG23_07015) - 1376872..1377330 (+) 459 WP_077722142.1 redoxin domain-containing protein -
  LSG23_RS07035 (LSG23_07020) rok 1377782..1378378 (+) 597 WP_077722143.1 transcriptional regulator Rok Regulator
  LSG23_RS07040 (LSG23_07025) - 1378399..1379391 (-) 993 WP_069473386.1 sporulation protein -
  LSG23_RS07045 (LSG23_07030) - 1379537..1380139 (+) 603 WP_077722144.1 molybdenum cofactor guanylyltransferase -
  LSG23_RS07050 (LSG23_07035) - 1380191..1381210 (+) 1020 WP_077722145.1 molybdopterin-synthase adenylyltransferase MoeB -
  LSG23_RS07055 (LSG23_07040) glp 1381228..1382520 (+) 1293 WP_077722146.1 gephyrin-like molybdotransferase Glp -
  LSG23_RS07060 (LSG23_07045) mobB 1382481..1383002 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22553.58 Da        Isoelectric Point: 9.6909

>NTDB_id=634294 LSG23_RS07035 WP_077722143.1 1377782..1378378(+) (rok) [Bacillus velezensis strain CMML20-16]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNAGSLSDTKKEFRPEKKNDSLPVLAELAAQEMRSYQKPQ
TQPQSSQQQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=634294 LSG23_RS07035 WP_077722143.1 1377782..1378378(+) (rok) [Bacillus velezensis strain CMML20-16]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATGCGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAATGACTCCCTCCCGGTACTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCAGCAGATGCAGTCTATTACGTCTCTTCCCGCAGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCGAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

87.629

97.98

0.859