Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LSG23_RS06935 Genome accession   NZ_CP088973
Coordinates   1361917..1362381 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain CMML20-16     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1356917..1367381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS06915 (LSG23_06900) - 1357397..1359217 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  LSG23_RS06920 (LSG23_06905) - 1359193..1360412 (-) 1220 Protein_1303 aminotransferase A -
  LSG23_RS06925 (LSG23_06910) - 1360613..1360774 (-) 162 WP_164672396.1 hypothetical protein -
  LSG23_RS06930 (LSG23_06915) cheV 1360963..1361874 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  LSG23_RS06935 (LSG23_06920) kre 1361917..1362381 (-) 465 WP_003154622.1 YkyB family protein Regulator
  LSG23_RS06940 (LSG23_06925) - 1362504..1363796 (-) 1293 WP_077722138.1 MFS transporter -
  LSG23_RS06945 (LSG23_06930) - 1363872..1364366 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  LSG23_RS06950 (LSG23_06935) - 1364441..1365304 (-) 864 WP_077722139.1 metallophosphoesterase -
  LSG23_RS06955 (LSG23_06940) fadH 1365448..1366212 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  LSG23_RS06960 (LSG23_06945) - 1366323..1366871 (+) 549 WP_077722140.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=634293 LSG23_RS06935 WP_003154622.1 1361917..1362381(-) (kre) [Bacillus velezensis strain CMML20-16]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=634293 LSG23_RS06935 WP_003154622.1 1361917..1362381(-) (kre) [Bacillus velezensis strain CMML20-16]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929