Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LSG23_RS05605 Genome accession   NZ_CP088973
Coordinates   1116927..1117118 (+) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus velezensis strain CMML20-16     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111927..1122118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS05575 (LSG23_05560) argF 1112779..1113750 (+) 972 WP_071391999.1 ornithine carbamoyltransferase -
  LSG23_RS05580 (LSG23_05565) - 1113826..1114005 (+) 180 WP_003155070.1 YjzC family protein -
  LSG23_RS05585 (LSG23_05570) - 1114042..1114227 (-) 186 WP_032874447.1 YjzD family protein -
  LSG23_RS05590 (LSG23_05575) - 1114488..1115222 (+) 735 WP_077722050.1 hypothetical protein -
  LSG23_RS05595 (LSG23_05580) - 1115305..1115871 (+) 567 WP_077722051.1 hypothetical protein -
  LSG23_RS05600 (LSG23_05585) med 1115961..1116914 (+) 954 WP_070081621.1 BMP family ABC transporter substrate-binding protein Regulator
  LSG23_RS05605 (LSG23_05590) comZ 1116927..1117118 (+) 192 WP_003155061.1 ComZ family protein Regulator
  LSG23_RS05610 (LSG23_05595) - 1117148..1117366 (-) 219 WP_003155059.1 hypothetical protein -
  LSG23_RS05615 (LSG23_05600) - 1117534..1118472 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  LSG23_RS05620 (LSG23_05605) fabF 1118495..1119733 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  LSG23_RS05625 (LSG23_05610) - 1119817..1120602 (+) 786 WP_077722052.1 DUF2268 domain-containing protein -
  LSG23_RS05630 (LSG23_05615) - 1120776..1121762 (+) 987 WP_029325950.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=634286 LSG23_RS05605 WP_003155061.1 1116927..1117118(+) (comZ) [Bacillus velezensis strain CMML20-16]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=634286 LSG23_RS05605 WP_003155061.1 1116927..1117118(+) (comZ) [Bacillus velezensis strain CMML20-16]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794