Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LSG23_RS02015 Genome accession   NZ_CP088973
Coordinates   425878..426831 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML20-16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420878..431831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS01990 (LSG23_01995) - 420921..422354 (+) 1434 WP_172802825.1 HAMP domain-containing sensor histidine kinase -
  LSG23_RS01995 (LSG23_02000) rapC 422507..423655 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  LSG23_RS02000 (LSG23_02005) phrC 423639..423758 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LSG23_RS02005 (LSG23_02010) - 423909..424019 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  LSG23_RS02010 (LSG23_02015) - 424099..425463 (-) 1365 WP_077721796.1 aspartate kinase -
  LSG23_RS02015 (LSG23_02020) ceuB 425878..426831 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  LSG23_RS02020 (LSG23_02025) - 426821..427768 (+) 948 WP_077721797.1 iron chelate uptake ABC transporter family permease subunit -
  LSG23_RS02025 (LSG23_02030) - 427762..428520 (+) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  LSG23_RS02030 (LSG23_02035) - 428542..429486 (+) 945 WP_077721798.1 siderophore ABC transporter substrate-binding protein -
  LSG23_RS02035 (LSG23_02040) - 429528..430952 (-) 1425 WP_063636989.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=634275 LSG23_RS02015 WP_003156332.1 425878..426831(+) (ceuB) [Bacillus velezensis strain CMML20-16]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=634275 LSG23_RS02015 WP_003156332.1 425878..426831(+) (ceuB) [Bacillus velezensis strain CMML20-16]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGGAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533