Detailed information NTG0634271

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA8_RS07170
• Genome accession: NZ_CP104869
• Coordinates: 1516115..1517119 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1511115..1522119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA8_RS07140	fghA	1511206..1512058 (+)	853	Protein_1420	S-formylglutathione hydrolase	-
PALA8_RS07145 (PALA8_01426)	ispF	1512129..1512602 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA8_RS07150 (PALA8_01427)	truD	1512599..1513666 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
PALA8_RS07155 (PALA8_01428)	surE	1513654..1514403 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA8_RS07160 (PALA8_01429)	-	1514436..1515071 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA8_RS07165 (PALA8_01430)	-	1515117..1516010 (+)	894	WP_003129949.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA8_RS07170 (PALA8_01431)	rpoS	1516115..1517119 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA8_RS07175 (PALA8_01432)	fdxA	1517545..1517868 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA8_RS07180 (PALA8_01433)	mutS	1517935..1520502 (-)	2568	WP_269973559.1	DNA mismatch repair protein MutS	-
PALA8_RS07185 (PALA8_01434)	-	1520628..1521635 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=634271 PALA8_RS07170 WP_003113871.1 1516115..1517119(+) (rpoS) [Pseudomonas aeruginosa strain PALA8]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=634271 PALA8_RS07170 WP_003113871.1 1516115..1517119(+) (rpoS) [Pseudomonas aeruginosa strain PALA8]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653