Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LSG23_RS00250 Genome accession   NZ_CP088973
Coordinates   45612..45902 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMML20-16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40612..50902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS00210 (LSG23_00210) darA 40629..40958 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  LSG23_RS00215 (LSG23_00215) - 40971..41411 (+) 441 WP_004264730.1 YaaR family protein -
  LSG23_RS00220 (LSG23_00220) holB 41423..42412 (+) 990 WP_077721686.1 DNA polymerase III subunit delta' -
  LSG23_RS00225 (LSG23_00225) ricT 42415..43242 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  LSG23_RS00230 (LSG23_00230) yabA 43257..43616 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  LSG23_RS00235 (LSG23_00235) - 43677..44420 (+) 744 WP_077721687.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LSG23_RS00240 (LSG23_00240) - 44407..44706 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  LSG23_RS00245 (LSG23_00245) rsmI 44681..45562 (+) 882 WP_070081259.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LSG23_RS00250 (LSG23_00250) abrB 45612..45902 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  LSG23_RS00255 (LSG23_00255) metG 46385..48376 (+) 1992 WP_077721688.1 methionine--tRNA ligase -
  LSG23_RS00260 (LSG23_00260) - 48452..49219 (+) 768 WP_032868379.1 TatD family hydrolase -
  LSG23_RS00265 (LSG23_00265) - 49354..50679 (+) 1326 WP_094247906.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=634266 LSG23_RS00250 WP_169510469.1 45612..45902(-) (abrB) [Bacillus velezensis strain CMML20-16]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=634266 LSG23_RS00250 WP_169510469.1 45612..45902(-) (abrB) [Bacillus velezensis strain CMML20-16]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979