Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA8_RS01930 Genome accession   NZ_CP104869
Coordinates   422700..424079 (+) Length   459 a.a.
NCBI ID   WP_023094490.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417700..429079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA8_RS01910 (PALA8_00379) - 418537..419103 (-) 567 WP_003084491.1 hypothetical protein -
  PALA8_RS01915 (PALA8_00380) rsmD 419106..419702 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PALA8_RS01920 (PALA8_00381) - 419702..421189 (-) 1488 WP_003128927.1 M16 family metallopeptidase -
  PALA8_RS01925 (PALA8_00382) - 421182..422579 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  PALA8_RS01930 (PALA8_00383) pilA 422700..424079 (+) 1380 WP_023094490.1 signal recognition particle-docking protein FtsY Machinery gene
  PALA8_RS01935 (PALA8_00384) ftsE 424076..424747 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PALA8_RS01940 (PALA8_00385) ftsX 424747..425754 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PALA8_RS01945 (PALA8_00386) rpoH 425868..426722 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  PALA8_RS01950 (PALA8_00387) - 426787..427392 (+) 606 WP_003084511.1 hypothetical protein -
  PALA8_RS01955 (PALA8_00388) mtgA 427397..428128 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PALA8_RS01960 (PALA8_00389) - 428165..428542 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  PALA8_RS01965 (PALA8_00390) thiS 428645..428845 (+) 201 WP_003110013.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48844.28 Da        Isoelectric Point: 4.4808

>NTDB_id=634256 PALA8_RS01930 WP_023094490.1 422700..424079(+) (pilA) [Pseudomonas aeruginosa strain PALA8]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQG
LSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRP
VEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADS
ASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVEL
TGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=634256 PALA8_RS01930 WP_023094490.1 422700..424079(+) (pilA) [Pseudomonas aeruginosa strain PALA8]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCATCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGC
CCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGA
CTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCT
CGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGC
GCGTGGCGCGCAAGGAGCTGGCCGACAGCGGTGCGCTGTACAAAGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCG
GTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGAC
CACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCG
CCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCC
GCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCT
GCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATG
AGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTG
ACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCC
GATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCG
CAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(254-453)

SRP54-type protein, helical bundle domain (SRP54_N)

(169-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.488

74.946

0.401