Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LRO84_RS16710 Genome accession   NZ_CP088955
Coordinates   3527989..3530217 (+) Length   742 a.a.
NCBI ID   WP_017391354.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3522989..3535217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS16685 (LRO84_16685) - 3524489..3524827 (-) 339 WP_231762024.1 tRNA-binding protein -
  LRO84_RS16690 (LRO84_16690) - 3525071..3525334 (+) 264 WP_198079090.1 DUF2798 domain-containing protein -
  LRO84_RS16695 (LRO84_16695) - 3525402..3525746 (-) 345 WP_003654643.1 hypothetical protein -
  LRO84_RS16700 (LRO84_16700) gspG 3526015..3526497 (-) 483 WP_414826834.1 type II secretion system major pseudopilin GspG -
  LRO84_RS18810 - 3526533..3526611 (-) 79 Protein_3266 type II secretion system protein GspG -
  LRO84_RS16705 (LRO84_16705) gspF 3526635..3527840 (-) 1206 WP_005045048.1 type II secretion system inner membrane protein GspF -
  LRO84_RS16710 (LRO84_16710) priA 3527989..3530217 (+) 2229 WP_017391354.1 primosomal protein N' Machinery gene
  LRO84_RS16715 (LRO84_16715) - 3530294..3532138 (+) 1845 WP_231762025.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LRO84_RS16720 (LRO84_16720) hslO 3532303..3533178 (+) 876 WP_004640903.1 Hsp33 family molecular chaperone HslO -
  LRO84_RS16725 (LRO84_16725) - 3533316..3533927 (+) 612 WP_017391356.1 LysE family translocator -
  LRO84_RS16730 (LRO84_16730) - 3534074..3535030 (+) 957 WP_231762026.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84151.06 Da        Isoelectric Point: 8.6622

>NTDB_id=634220 LRO84_RS16710 WP_017391354.1 3527989..3530217(+) (priA) [Acinetobacter calcoaceticus strain ARu19]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTEAQYERAQVGSRVAISFGRQNLIGIITEKVNPHEPFTGKFQLKAISELL
DEQPILDEQVLSLLTWSAQYYQFPVGEVMQTALPAILRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPS
GTTENILNLSGVETATLKALEKKGLVECTLEPHDFSPTPVQLAQMPLTLNEDQKQATQQVIKAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTSLQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=634220 LRO84_RS16710 WP_017391354.1 3527989..3530217(+) (priA) [Acinetobacter calcoaceticus strain ARu19]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCGAAGCACAATATGAACGGGCTCAAGTAGGCTCACGCGTCGCCATTTCATTTGGGCGACAAAACCTGA
TTGGTATCATCACTGAAAAAGTGAATCCACATGAGCCATTTACAGGCAAATTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGAACAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAGTTGGCGA
GGTCATGCAAACCGCCCTTCCGGCCATACTGCGTCAGGGCAAACCGATGGACGTTTTGTTCCATCTCTGGAAAATTACTC
CATGCGACAATGTTGAGGCACTGCTTAAACGTTCAGTAAAGCAACAAGATGCTTATCAGATTTTAAAGTTACATCCCTCT
GGAACAACAGAGAACATTCTCAATTTAAGTGGCGTAGAAACTGCCACACTTAAAGCGCTAGAAAAGAAAGGTTTGGTTGA
ATGTACGCTTGAACCACACGACTTTAGCCCTACACCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGATCAAA
AGCAAGCAACCCAACAGGTTATTAAAGCACAACATCAATACCAAGCATTTTTGCTAGATGGTTTAACAGGTAGCGGTAAA
ACCGAAGTTTATCTACACATCATGCACGAGGTGCTAAAGCAAGGTAAACAAGTACTGGTTTTGGTGCCTGAAATTGGTTT
AACCCCTCAAACCATTTCTCGTTTTAAGTCTCGTTTTAATTGTGATATTGCTTTATTGCACTCTGGCCTTAACGATTCCA
AACGGTTACAAGCATGGCAGCAGGCACAGACCGGAAAAGCATCTATTATTTTAGGGACACGCTCAGCGATCTATACACCG
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACCTGTCTTATAAACAGCAAGAAGGCTTCCGTTACCATGC
GCGTGATGTCGCACTATACCGAGGACACTTACAAAGCTGCCCAGTGATTTTAGGTTCGGCAACACCAAGTATTGATAGTT
ATTATTTGGTCGAAACTGGCAAGTTAACTTCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTCTTATTGAACAAATCAAACATACTTTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCCA
ATTGTCCACATTGTGATGCACATTTTACTTTGCATACCCAGCCTTATTCTTATTTACATTGCCACCACTGCGGAACCATT
CATCGCTTACCAGATCATTGCCCTGAGTGTCAGCAAAAGAGCTTAAAAACCCTAGGCGCAGGAACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCAGAGCATGACGTGATTCGGGTAGATCGTGACAGTACCAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAGCCAACAATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCA
CATGTGACTTTGGTTGCCATTTTAGATATTGATGCAGGGTTACTTAGTGTCGATATCCGTGCGCCAGAACGTACTGCGCA
GTTAATTGTTCAAGTTGCTGGTCGTGCAGGTCGTGGTGAGCATAAAGGCCATGTCTATTTACAAACCTTAAGACCCGATC
ACCCACTCCTAACCACACTCATCGAAAAAGACTATCGCGCGGTTGCCAAACAAACATTGGCTGAGCGTAAAGTTGCTTTG
CTACCGCCTTATCGCTATGCAGTACTCATACGTGCAGAGTCGAAAGATCGAGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAGTTGCAGGTGAGATTGTTGATATTTGGGGACCTATTCCAGCCCCTATGGAACGTAAAGCGG
GACGCTATCGTGCCCACATGGTGATTTTATCTGCCGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCTCAA
TTGGTTCATGCCCCAAGACAGCATCAACTCAGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

95.687

100

0.957