Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LRO84_RS02425 Genome accession   NZ_CP088955
Coordinates   500276..501160 (+) Length   294 a.a.
NCBI ID   WP_231762500.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495276..506160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS02400 (LRO84_02400) - 495587..496834 (-) 1248 WP_231762498.1 YihY family inner membrane protein -
  LRO84_RS02405 (LRO84_02405) wrbA 497196..497804 (+) 609 WP_231762499.1 NAD(P)H:quinone oxidoreductase -
  LRO84_RS02410 (LRO84_02410) - 497853..498428 (-) 576 WP_004639480.1 xanthine phosphoribosyltransferase -
  LRO84_RS02415 (LRO84_02415) - 498500..499213 (-) 714 WP_003653602.1 DUF3108 domain-containing protein -
  LRO84_RS02420 (LRO84_02420) - 499372..500043 (-) 672 WP_202743268.1 hypothetical protein -
  LRO84_RS02425 (LRO84_02425) tonB2 500276..501160 (+) 885 WP_231762500.1 energy transducer TonB Machinery gene
  LRO84_RS02430 (LRO84_02430) ybeY 501263..501745 (-) 483 WP_003653597.1 rRNA maturation RNase YbeY -
  LRO84_RS02435 (LRO84_02435) - 502023..503111 (-) 1089 WP_003653596.1 PhoH family protein -
  LRO84_RS02440 (LRO84_02440) miaB 503149..504600 (-) 1452 WP_017388326.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33625.12 Da        Isoelectric Point: 9.1103

>NTDB_id=634201 LRO84_RS02425 WP_231762500.1 500276..501160(+) (tonB2) [Acinetobacter calcoaceticus strain ARu19]
MLNKRSLSIEPFYYWWQDRVFIAATILAVLLHIFVLLIHFSMPSPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGA
FREAHRTSSDTPNPMSNDTSTGDAQLETLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKLQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKSSVRRGAPFGHFDTNMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=634201 LRO84_RS02425 WP_231762500.1 500276..501160(+) (tonB2) [Acinetobacter calcoaceticus strain ARu19]
ATGTTGAACAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATTGCTGCGACAATATT
GGCAGTCTTACTGCATATTTTTGTGTTGCTCATTCACTTTTCGATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGATCAAGCAATGAGCCAGTTCAGCAGGCAGACTTTTTGGCGCAAGCAGACCAGCAAGGTTCAGGCGCA
TTTCGTGAAGCTCACCGTACCTCTAGTGATACTCCAAATCCCATGTCTAATGATACTTCAACTGGAGATGCACAGTTAGA
AACTTTGCAAAAGGTTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTCTTAATGACTGTTTTGAGTTGGCAAAAAC
AAGCTGACGCCAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTTGCAAGT
CTCGAAGCACAATATTTACAACGTAGACAAGATTTCAGTCGCCAGCAAAAAATAAAAACAGTAGATGGAATTCAGGCGAA
AAAAGATGCCTCGGCTGCTTATTTAGATAAATTCCGTGAGAAAGTGGAGTTGTATGGTAATCGCTATTATCCAGAAGAAG
CCAAACTGCAACAGTTGAAAGGCGAAGTTCGTTTAATGGTTATTTTAAATGCTCAAGGTGGGATTCGTGCAATTCGATTG
CTTGAAAGTTCAGGGCATTCAGTATTGGATGAAGCTGCGAAGTCTTCAGTACGTCGTGGTGCACCATTTGGGCATTTTGA
TACCAATATGAAAGATATTTCTGAATTACGAATTGTGCGTACGTGGCGTTTCGATCCGGCTCAAGCAGAATTTGAAGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.776

100

0.888