Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LRO55_RS17225 Genome accession   NZ_CP088954
Coordinates   3653948..3654274 (-) Length   108 a.a.
NCBI ID   WP_003654486.1    Uniprot ID   A0AAW8QRU4
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3648948..3659274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS17205 (LRO55_17205) - 3649050..3649679 (-) 630 WP_231764201.1 FHA domain-containing protein -
  LRO55_RS17210 (LRO55_17210) gspD 3649721..3651991 (-) 2271 WP_231764202.1 type II secretion system secretin GspD -
  LRO55_RS17215 (LRO55_17215) - 3652033..3652869 (-) 837 WP_231764203.1 type II secretion system protein N -
  LRO55_RS17220 (LRO55_17220) gspN 3652872..3653615 (-) 744 WP_231764204.1 type II secretion system protein N -
  LRO55_RS17225 (LRO55_17225) hns 3653948..3654274 (-) 327 WP_003654486.1 H-NS family nucleoid-associated regulatory protein Regulator
  LRO55_RS17230 (LRO55_17230) - 3654469..3654909 (-) 441 WP_004640721.1 acyl-CoA thioesterase -
  LRO55_RS17235 (LRO55_17235) - 3654917..3656110 (-) 1194 WP_231764205.1 heme biosynthesis protein HemY -
  LRO55_RS17240 (LRO55_17240) - 3656120..3656962 (-) 843 WP_231764206.1 hypothetical protein -
  LRO55_RS17245 (LRO55_17245) - 3656971..3657738 (-) 768 WP_231764207.1 uroporphyrinogen-III synthase -
  LRO55_RS17250 (LRO55_17250) hemC 3657742..3658659 (-) 918 WP_231764208.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12506.17 Da        Isoelectric Point: 5.0524

>NTDB_id=634176 LRO55_RS17225 WP_003654486.1 3653948..3654274(-) (hns) [Acinetobacter calcoaceticus strain ACa13]
MKPDISELSVEELKRLQEEAEALIVSKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=634176 LRO55_RS17225 WP_003654486.1 3653948..3654274(-) (hns) [Acinetobacter calcoaceticus strain ACa13]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGTTTACAAGAAGAAGCTGAAGCTTTAATTGTAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATCGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTTGAACCGCGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGCCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

98.148

100

0.981